Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   P5638_RS14185 Genome accession   NZ_CP120599
Coordinates   2780939..2781841 (-) Length   300 a.a.
NCBI ID   WP_224426534.1    Uniprot ID   -
Organism   Bacillus safensis strain PRO114     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2775939..2786841
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5638_RS14170 (P5638_14170) xerC 2776315..2777232 (-) 918 WP_024424182.1 tyrosine recombinase XerC -
  P5638_RS14175 (P5638_14175) trmFO 2777295..2778599 (-) 1305 WP_024424183.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  P5638_RS14180 (P5638_14180) topA 2778670..2780745 (-) 2076 WP_024424184.1 type I DNA topoisomerase -
  P5638_RS14185 (P5638_14185) dprA 2780939..2781841 (-) 903 WP_224426534.1 DNA-processing protein DprA Machinery gene
  P5638_RS14190 (P5638_14190) sucD 2781905..2782807 (-) 903 WP_007499624.1 succinate--CoA ligase subunit alpha -
  P5638_RS14195 (P5638_14195) sucC 2782830..2783990 (-) 1161 WP_024426972.1 ADP-forming succinate--CoA ligase subunit beta -
  P5638_RS14200 (P5638_14200) - 2784167..2784442 (-) 276 WP_003211418.1 FlhB-like flagellar biosynthesis protein -
  P5638_RS14205 (P5638_14205) - 2784439..2786178 (-) 1740 WP_277721995.1 glycosyltransferase -

Sequence

Protein


Download         Length: 300 a.a.        Molecular weight: 34042.37 Da        Isoelectric Point: 8.8768

>NTDB_id=806519 P5638_RS14185 WP_224426534.1 2780939..2781841(-) (dprA) [Bacillus safensis strain PRO114]
MYNVSERMIFHRLKGLISPSLLTKWWKVDPELYINEETHHFKQDRALQTIDFTRLKQAEENEFPIFQHIVQAYLKQNIHM
IPITSPLYPSTLKNIYDPPPVLFLKGNVSYLNEEKSLGVVGTRAPSSYGEACVKKIVGELVKEEWMIVSGLAKGIDGLAH
KECIRKKGKTIGIIAGGFQHVYPKEHAQMAQYMGEHHLLLSEHPPYVKPEKWHFPMRNRLISALTKGTIVIQCKEKSGSL
ITAYQALEQGKEVFAVAGSIFDSNSTGPARLIQQGAKLVHSTKDILEEFSFHSVQYTELS

Nucleotide


Download         Length: 903 bp        

>NTDB_id=806519 P5638_RS14185 WP_224426534.1 2780939..2781841(-) (dprA) [Bacillus safensis strain PRO114]
ATGTACAACGTGTCCGAAAGAATGATTTTTCACCGCTTAAAAGGCCTCATCTCACCCTCATTATTAACAAAATGGTGGAA
AGTCGATCCTGAACTATATATAAATGAAGAAACACATCATTTTAAACAGGATCGAGCATTACAAACGATCGACTTTACCC
GCTTAAAACAAGCTGAAGAAAATGAATTCCCCATTTTTCAACACATCGTTCAAGCCTATTTAAAGCAAAACATTCACATG
ATTCCCATCACATCACCCTTATATCCCAGCACATTAAAAAATATTTATGATCCTCCCCCTGTGTTATTCCTAAAAGGAAA
CGTATCATATTTAAATGAAGAAAAAAGTTTAGGTGTAGTCGGCACGCGAGCTCCATCGTCTTATGGAGAAGCATGTGTGA
AGAAAATTGTTGGTGAGCTTGTCAAGGAAGAGTGGATGATTGTCAGTGGTTTAGCTAAAGGAATCGATGGACTGGCACAT
AAAGAGTGCATCAGGAAAAAAGGGAAAACAATCGGCATTATAGCAGGCGGCTTTCAGCATGTATACCCAAAAGAACATGC
ACAAATGGCTCAATACATGGGCGAACATCATTTGCTTTTGTCAGAGCACCCGCCTTATGTCAAACCAGAAAAGTGGCATT
TTCCAATGAGAAATCGTTTAATTAGTGCATTGACGAAAGGGACCATCGTGATTCAGTGCAAAGAAAAGAGCGGTTCTCTT
ATTACAGCCTATCAAGCGCTTGAGCAAGGCAAAGAAGTATTTGCGGTTGCTGGATCCATCTTTGATTCTAATTCCACAGG
TCCGGCAAGACTCATTCAGCAGGGGGCAAAGCTTGTTCATTCCACAAAGGATATTTTAGAGGAATTCTCCTTCCACAGCG
TTCAATATACTGAACTCTCATAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(75-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

54.355

95.667

0.52
  dprA Legionella pneumophila strain ERS1305867

37.705

100

0.383