Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   P5638_RS02985 Genome accession   NZ_CP120599
Coordinates   600052..601164 (-) Length   370 a.a.
NCBI ID   WP_041105878.1    Uniprot ID   A0AAP7UIW5
Organism   Bacillus safensis strain PRO114     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 595052..606164
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5638_RS02970 (P5638_02970) gyrA 595078..597582 (-) 2505 WP_277722543.1 DNA gyrase subunit A -
  P5638_RS02975 (P5638_02975) gyrB 597815..599731 (-) 1917 WP_024424077.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  P5638_RS02980 (P5638_02980) - 599789..600034 (-) 246 WP_056766786.1 extracellular matrix/biofilm biosynthesis regulator RemA family protein -
  P5638_RS02985 (P5638_02985) recF 600052..601164 (-) 1113 WP_041105878.1 DNA replication/repair protein RecF Machinery gene
  P5638_RS02990 (P5638_02990) yaaA 601181..601396 (-) 216 WP_008360916.1 S4 domain-containing protein YaaA -
  P5638_RS02995 (P5638_02995) dnaN 601547..602683 (-) 1137 WP_024424074.1 DNA polymerase III subunit beta -
  P5638_RS03000 (P5638_03000) dnaA 602880..604220 (-) 1341 WP_024424073.1 chromosomal replication initiator protein DnaA -
  P5638_RS03005 (P5638_03005) rpmH 604841..604975 (+) 135 WP_073208224.1 50S ribosomal protein L34 -
  P5638_RS03010 (P5638_03010) rnpA 605054..605413 (+) 360 WP_024427652.1 ribonuclease P protein component -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42559.64 Da        Isoelectric Point: 7.3663

>NTDB_id=806486 P5638_RS02985 WP_041105878.1 600052..601164(-) (recF) [Bacillus safensis strain PRO114]
MYIQSLALTSYRNYEHTELQFDNKVNVMIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDQDYAKIEGRVIKKNGP
LPMQLVISKKGKKGKVNHIEQQKLSHYVGALNTIMFAPEDLSLVKGSPQIRRRFLDMEIGQVSAVYLHDLSLYQKILSQR
NHYLKQLQTRKQSDQAMLEILTEQLIDAAAKVVKRRLTFTKQLEKWAQPLHFGISRELETLTLQYQTAIEVSEASDLSKI
KNSYEESFQKLREREIDRGVTLWGPHRDDLLFFVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVEGIDHATLKEAEIFRVASGKVID

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=806486 P5638_RS02985 WP_041105878.1 600052..601164(-) (recF) [Bacillus safensis strain PRO114]
ATGTACATTCAAAGTCTGGCGTTAACTTCATACCGAAACTATGAACACACCGAGCTTCAATTCGACAATAAGGTGAATGT
CATGATCGGTGAGAATGCCCAAGGTAAAACGAACTTGATGGAAGCGATCTATGTATTGTCGATGGCAAAGTCTCATCGTA
CGTCAAATGATAAAGAACTTATCCGATGGGACCAAGACTATGCTAAAATAGAAGGTAGAGTCATTAAAAAAAATGGTCCA
CTCCCAATGCAGCTCGTGATCTCAAAAAAAGGGAAAAAGGGCAAGGTCAATCACATTGAACAACAGAAGCTCAGTCATTA
TGTTGGTGCGTTAAACACCATCATGTTTGCGCCAGAGGACTTAAGTCTTGTGAAGGGCAGCCCGCAAATCCGCAGAAGAT
TCCTCGACATGGAGATTGGACAAGTTTCTGCTGTCTACTTGCATGATTTATCGCTCTATCAAAAAATCCTTTCTCAGCGG
AATCATTACTTGAAACAATTGCAGACAAGAAAGCAATCGGATCAAGCGATGCTGGAGATTTTAACAGAGCAGTTGATTGA
TGCGGCAGCGAAAGTGGTCAAAAGACGACTGACTTTTACGAAACAGCTCGAAAAATGGGCGCAGCCGCTGCATTTTGGGA
TTTCTAGAGAGCTAGAAACACTTACGCTCCAATACCAGACGGCAATAGAGGTATCAGAAGCGTCAGACTTGTCGAAAATA
AAGAATAGCTATGAAGAATCGTTTCAGAAACTAAGAGAGAGAGAAATCGACCGAGGGGTGACACTGTGGGGGCCTCACAG
AGATGACCTGCTTTTCTTTGTGAATGGTCGGGATGTTCAGACATATGGCTCTCAAGGGCAGCAAAGAACAACAGCTCTTT
CACTAAAGCTGGCAGAAATTGATCTGATACATGAAGAAATCGGAGAATATCCTATTCTTCTACTTGATGATGTGTTATCT
GAACTTGATGATTACAGACAGTCTCATTTGCTCCATACCATTCAGGGACGTGTACAGACCTTCGTCACCACAACAAGTGT
TGAAGGCATCGATCACGCCACCCTGAAAGAAGCGGAAATTTTCAGAGTAGCCAGTGGAAAAGTAATTGACTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-353)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

83.469

99.73

0.832