Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   P5622_RS12500 Genome accession   NZ_CP120598
Coordinates   2355355..2356158 (+) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus subtilis strain PRO115     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2350355..2361158
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5622_RS12480 (P5622_12480) yqxC 2350466..2351368 (+) 903 WP_019712715.1 TlyA family RNA methyltransferase -
  P5622_RS12485 (P5622_12485) argR 2351408..2351857 (+) 450 WP_003230265.1 arginine repressor ArgR -
  P5622_RS12490 (P5622_12490) recN 2351894..2353624 (+) 1731 WP_003230267.1 DNA repair protein RecN Machinery gene
  P5622_RS12495 (P5622_12495) spoIVB 2353799..2355079 (+) 1281 WP_004398697.1 SpoIVB peptidase -
  P5622_RS12500 (P5622_12500) spo0A 2355355..2356158 (+) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  P5622_RS12505 (P5622_12505) yqiG 2356623..2357741 (-) 1119 WP_004398691.1 NADH-dependent flavin oxidoreductase -
  P5622_RS12510 (P5622_12510) - 2357814..2357966 (-) 153 WP_003230276.1 hypothetical protein -
  P5622_RS12515 (P5622_12515) yqiH 2358274..2358567 (+) 294 WP_003230284.1 lipoprotein -
  P5622_RS12520 (P5622_12520) yqiI 2358582..2359202 (+) 621 WP_010886565.1 N-acetylmuramoyl-L-alanine amidase -
  P5622_RS12525 (P5622_12525) glpQ 2359281..2360012 (+) 732 WP_003230288.1 glycerophosphodiester phosphodiesterase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=806452 P5622_RS12500 WP_003226427.1 2355355..2356158(+) (spo0A) [Bacillus subtilis strain PRO115]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=806452 P5622_RS12500 WP_003226427.1 2355355..2356158(+) (spo0A) [Bacillus subtilis strain PRO115]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGCTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATTATGCCGCATCTAGACGGACTTGCGGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGGCAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCGCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTTAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGCCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTTGGTTATACTGTC
AGCATGACAAAAGCTAAACCTACCAACAGTGAATTCATTGCAATGGTTGCGGATAAGCTGAGGTTAGAGCATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1