Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   P5622_RS12305 Genome accession   NZ_CP120598
Coordinates   2321195..2321530 (-) Length   111 a.a.
NCBI ID   WP_003226345.1    Uniprot ID   A0AAE2VGU9
Organism   Bacillus subtilis strain PRO115     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2316195..2326530
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5622_RS12250 (P5622_12250) comGC 2316215..2316511 (+) 297 WP_003230162.1 comG operon protein ComGC Machinery gene
  P5622_RS12255 (P5622_12255) comGD 2316501..2316932 (+) 432 WP_004398628.1 comG operon protein ComGD Machinery gene
  P5622_RS12260 (P5622_12260) comGE 2316916..2317263 (+) 348 WP_003230165.1 ComG operon protein 5 Machinery gene
  P5622_RS12265 (P5622_12265) comGF 2317289..2317672 (+) 384 WP_003230168.1 ComG operon protein ComGF Machinery gene
  P5622_RS12270 (P5622_12270) comGG 2317673..2318047 (+) 375 WP_003230170.1 ComG operon protein ComGG Machinery gene
  P5622_RS12275 (P5622_12275) spoIIT 2318118..2318297 (+) 180 WP_003230176.1 YqzE family protein -
  P5622_RS12280 (P5622_12280) - 2318339..2318650 (-) 312 WP_347176576.1 DUF3889 domain-containing protein -
  P5622_RS12290 (P5622_12290) tapA 2318936..2319697 (+) 762 WP_004399106.1 amyloid fiber anchoring/assembly protein TapA -
  P5622_RS12295 (P5622_12295) sipW 2319681..2320253 (+) 573 WP_003246088.1 signal peptidase I -
  P5622_RS12300 (P5622_12300) tasA 2320317..2321102 (+) 786 WP_004398632.1 biofilm matrix protein TasA -
  P5622_RS12305 (P5622_12305) sinR 2321195..2321530 (-) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  P5622_RS12310 (P5622_12310) sinI 2321564..2321737 (-) 174 WP_003230187.1 anti-repressor SinI family protein Regulator
  P5622_RS12315 (P5622_12315) yqhG 2321920..2322714 (-) 795 WP_277687258.1 YqhG family protein -
  P5622_RS12320 (P5622_12320) yqhH 2322735..2324408 (-) 1674 WP_004398544.1 SNF2-related protein -
  P5622_RS12325 (P5622_12325) gcvT 2324850..2325938 (+) 1089 WP_004398598.1 glycine cleavage system aminomethyltransferase GcvT -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12988.64 Da        Isoelectric Point: 7.2023

>NTDB_id=806449 P5622_RS12305 WP_003226345.1 2321195..2321530(-) (sinR) [Bacillus subtilis strain PRO115]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=806449 P5622_RS12305 WP_003226345.1 2321195..2321530(-) (sinR) [Bacillus subtilis strain PRO115]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

100

100

1