Detailed information    

insolico Bioinformatically predicted

Overview


Name   comQ   Type   Regulator
Locus tag   P5622_RS08180 Genome accession   NZ_CP120598
Coordinates   1578459..1579358 (+) Length   299 a.a.
NCBI ID   WP_003243039.1    Uniprot ID   G9LQ79
Organism   Bacillus subtilis strain PRO115     
Function   modification of ComX; production of ComX (predicted from homology)   
Competence regulation

Genomic Context


Location: 1573459..1584358
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5622_RS08150 (P5622_08150) pncA 1573924..1574475 (+) 552 WP_003243099.1 isochorismatase family cysteine hydrolase -
  P5622_RS08155 (P5622_08155) pncB 1574491..1575963 (+) 1473 WP_003228788.1 nicotinate phosphoribosyltransferase -
  P5622_RS08160 (P5622_08160) pdeH 1576100..1577329 (+) 1230 WP_003243525.1 cyclic di-GMP phosphodiesterase -
  P5622_RS08165 (P5622_08165) - 1577305..1577673 (-) 369 WP_003243784.1 hypothetical protein -
  P5622_RS08170 (P5622_08170) - 1577787..1577912 (-) 126 WP_003228793.1 hypothetical protein -
  P5622_RS08175 (P5622_08175) degQ 1578134..1578274 (+) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  P5622_RS08180 (P5622_08180) comQ 1578459..1579358 (+) 900 WP_003243039.1 ComX modifying isoprenyl transferase ComQ Regulator
  P5622_RS08185 (P5622_08185) comX 1579346..1579513 (+) 168 WP_003242801.1 competence pheromone ComX Regulator
  P5622_RS08190 (P5622_08190) comP 1579528..1581836 (+) 2309 Protein_1572 two-component system sensor histidine kinase ComP -
  P5622_RS08195 (P5622_08195) comA 1581918..1582562 (+) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  P5622_RS08200 (P5622_08200) yuxO 1582581..1582961 (+) 381 WP_003228810.1 hotdog fold thioesterase -
  P5622_RS08205 (P5622_08205) mnhG 1583000..1583374 (-) 375 WP_003244302.1 monovalent cation/H(+) antiporter subunit G -
  P5622_RS08210 (P5622_08210) mrpF 1583358..1583642 (-) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  P5622_RS08215 (P5622_08215) mrpE 1583642..1584118 (-) 477 WP_003244015.1 Na+/H+ antiporter subunit E -

Sequence


Protein


Download         Length: 299 a.a.        Molecular weight: 34218.11 Da        Isoelectric Point: 4.8304

>NTDB_id=806427 P5622_RS08180 WP_003243039.1 1578459..1579358(+) (comQ) [Bacillus subtilis strain PRO115]
MKEIVEQNIFNEDLSQLLYSFIDSKETFSFAESTILHYVVFGGENLDVATRLGAGIEILILSSDIMDDLEDEDNHHALWM
KINRSESLNAALSLYTVGLTSIYSLNNNPLIFKYVLKYVNEAMQGQHDDITNKSKTEDESLEVIRLKCGSLIALANVAGV
LLATGEYNETVERYSYYKGIIAQISGDYYVLLSGNRSDIEKNKHTLIYLYLKRLFNDASEDLLYLISHKDLYYKSLLDKE
KFQEKLIKAGVTQYISVLLEIYKQKCISAIEQLNLDKEKKELIKECLLSYTKGDTRCKT

Nucleotide


Download         Length: 900 bp        

>NTDB_id=806427 P5622_RS08180 WP_003243039.1 1578459..1579358(+) (comQ) [Bacillus subtilis strain PRO115]
ATGAAGGAGATTGTGGAGCAAAACATATTTAACGAGGATTTGTCACAACTTCTTTACTCATTTATTGATTCTAAAGAAAC
ATTCTCCTTTGCTGAATCCACAATCTTACATTATGTTGTTTTTGGAGGGGAGAATTTAGATGTTGCAACAAGGCTTGGCG
CGGGAATAGAAATTCTTATTCTTTCATCAGATATTATGGATGATCTTGAAGATGAAGATAATCACCATGCATTATGGATG
AAAATTAATCGCTCGGAGTCGTTAAATGCAGCACTTTCCTTGTATACAGTAGGATTAACGAGTATTTATTCATTAAATAA
CAATCCTCTAATTTTTAAATATGTTTTAAAATACGTAAACGAGGCCATGCAAGGTCAACATGACGATATCACTAATAAAT
CTAAAACAGAAGATGAAAGTTTAGAAGTAATTAGATTAAAATGTGGAAGTCTGATTGCACTAGCAAATGTAGCAGGTGTT
TTATTGGCTACAGGAGAATATAATGAAACAGTTGAAAGATATTCCTACTATAAAGGGATTATAGCTCAAATTTCTGGAGA
TTATTATGTTCTTTTATCCGGAAATCGCAGTGATATTGAAAAAAACAAACATACACTGATTTACTTATATCTTAAGCGCC
TTTTTAATGATGCTTCGGAAGATTTATTATACTTAATTTCACATAAAGACTTATATTATAAATCGTTACTTGATAAAGAG
AAATTCCAAGAAAAATTAATTAAAGCGGGAGTTACTCAATACATTTCGGTATTATTGGAAATATATAAACAGAAATGTAT
TTCTGCTATAGAACAATTAAATTTAGATAAAGAAAAAAAAGAGCTAATAAAGGAATGCTTATTAAGTTATACAAAGGGGG
ATACAAGATGCAAGACCTAA

Domains


Predicted by InterproScan.

(44-218)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB G9LQ79

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Bacillus subtilis subsp. subtilis str. 168

100

100

1