Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   P5622_RS06255 Genome accession   NZ_CP120598
Coordinates   1193523..1194245 (+) Length   240 a.a.
NCBI ID   WP_003227991.1    Uniprot ID   A0AAE2SKX0
Organism   Bacillus subtilis strain PRO115     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1188523..1199245
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5622_RS06230 (P5622_06230) degS 1188833..1189990 (+) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  P5622_RS06235 (P5622_06235) degU 1190073..1190762 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  P5622_RS06240 (P5622_06240) fakBA 1190860..1191705 (+) 846 WP_003244125.1 DegV family protein -
  P5622_RS06245 (P5622_06245) comFA 1191811..1193203 (+) 1393 Protein_1185 ATP-dependent helicase ComFA -
  P5622_RS06250 (P5622_06250) comFB 1193263..1193559 (+) 297 WP_003227989.1 late competence protein ComFB -
  P5622_RS06255 (P5622_06255) comFC 1193523..1194245 (+) 723 WP_003227991.1 comF operon protein ComFC Machinery gene
  P5622_RS06260 (P5622_06260) yvyF 1194319..1194738 (+) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  P5622_RS06265 (P5622_06265) flgM 1194819..1195085 (+) 267 WP_003227997.1 flagellar biosynthesis anti-sigma factor FlgM -
  P5622_RS06270 (P5622_06270) flgN 1195101..1195583 (+) 483 WP_003227999.1 flagellar protein FlgN -
  P5622_RS06275 (P5622_06275) flgK 1195602..1197125 (+) 1524 WP_003228001.1 flagellar hook-associated protein FlgK -
  P5622_RS06280 (P5622_06280) flgL 1197136..1198032 (+) 897 WP_003228004.1 flagellar hook-associated protein FlgL -
  P5622_RS06285 (P5622_06285) yviE 1198079..1198654 (+) 576 WP_003243053.1 DUF6470 family protein -
  P5622_RS06290 (P5622_06290) fliW 1198675..1199106 (+) 432 WP_003228007.1 flagellar assembly protein FliW -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27477.75 Da        Isoelectric Point: 9.0021

>NTDB_id=806423 P5622_RS06255 WP_003227991.1 1193523..1194245(+) (comFC) [Bacillus subtilis strain PRO115]
MSNEAGGGIHKLICLLCDSQFSQDVTWRALFLLKPDEKVCYSCRSKLKKITGHICPLCGRPQSVHAVCRDCEVWRTRIRD
SLLLRQNRSVYTYNDMMKETLSRFKFRGDAEIINAFKSDFSSTFSKVYPDKHFVLVPIPLSKEREEERGFNQAHLLAECL
DRPSHHPLIRLNNEKQSKKKKTERLLSECIFDTKNNSAEGMNIILIDDLYTTGATLHFAARCLLEKGKAASVSSFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=806423 P5622_RS06255 WP_003227991.1 1193523..1194245(+) (comFC) [Bacillus subtilis strain PRO115]
ATGTCAAACGAAGCAGGAGGAGGCATTCATAAACTGATCTGTTTATTATGTGATTCGCAATTTTCTCAAGATGTTACATG
GAGAGCCCTTTTTTTACTAAAGCCTGATGAAAAGGTTTGTTATTCTTGCAGAAGCAAATTAAAGAAAATCACAGGACATA
TCTGCCCCCTGTGCGGCAGACCTCAATCTGTTCATGCCGTATGCAGGGATTGCGAGGTGTGGAGAACAAGGATCAGAGAC
AGTTTGCTATTGCGTCAAAACCGTTCAGTTTACACATATAATGATATGATGAAAGAAACGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCATTTAAAAGTGATTTTTCTTCAACCTTTTCTAAGGTTTACCCCGATAAGCATTTTG
TTCTTGTACCTATTCCGCTGAGCAAGGAACGGGAAGAAGAGCGCGGATTTAACCAGGCACATCTCTTGGCAGAATGTTTA
GACCGGCCTTCCCACCATCCCCTCATTCGCCTGAATAATGAGAAACAGTCAAAGAAAAAGAAAACAGAACGCCTGCTGTC
AGAGTGCATTTTTGATACAAAAAATAATTCAGCAGAAGGTATGAATATCATTTTAATAGACGATCTTTATACAACAGGCG
CCACCTTGCACTTCGCAGCCCGCTGCTTATTAGAAAAAGGAAAAGCCGCTTCAGTGTCATCTTTTACCTTGATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

100

100

1