Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   P5663_RS19500 Genome accession   NZ_CP120590
Coordinates   3672177..3673997 (-) Length   606 a.a.
NCBI ID   WP_277716943.1    Uniprot ID   -
Organism   Priestia flexa strain PRO116     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 3667177..3678997
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5663_RS19465 (P5663_19475) - 3667600..3668241 (-) 642 WP_025908133.1 GTP pyrophosphokinase -
  P5663_RS19470 (P5663_19480) - 3668261..3668647 (-) 387 WP_025908134.1 hypothetical protein -
  P5663_RS19475 (P5663_19485) - 3668951..3669541 (+) 591 WP_076513368.1 CYTH domain-containing protein -
  P5663_RS19480 (P5663_19490) - 3669546..3670190 (+) 645 WP_277716942.1 lytic transglycosylase domain-containing protein -
  P5663_RS19485 (P5663_19495) - 3670411..3670821 (+) 411 WP_061785625.1 globin -
  P5663_RS19490 (P5663_19500) - 3670818..3671702 (+) 885 WP_061785626.1 ClpXP adapter SpxH family protein -
  P5663_RS19495 (P5663_19505) - 3671960..3672136 (+) 177 WP_090752849.1 hypothetical protein -
  P5663_RS19500 (P5663_19510) pepF 3672177..3673997 (-) 1821 WP_277716943.1 oligoendopeptidase F Regulator
  P5663_RS19505 (P5663_19515) - 3674148..3675335 (-) 1188 WP_253346757.1 competence protein CoiA -
  P5663_RS19510 (P5663_19520) cls 3675439..3676956 (-) 1518 WP_025908143.1 cardiolipin synthase -
  P5663_RS19515 (P5663_19525) mecA 3677037..3677720 (-) 684 WP_061785448.1 adaptor protein MecA -
  P5663_RS19520 (P5663_19530) - 3678042..3678704 (+) 663 WP_076513375.1 TerC family protein -

Sequence

Protein


Download         Length: 606 a.a.        Molecular weight: 70182.81 Da        Isoelectric Point: 4.6802

>NTDB_id=806392 P5663_RS19500 WP_277716943.1 3672177..3673997(-) (pepF) [Priestia flexa strain PRO116]
MSEQSTVKKLPNRSEIKVEDTWRLEDIFETDEAWEKEFQAVKALVPEMEQYRGKLGESADTLFKALQQQDELTMRVSKLY
TYAHMRYDQDTTNSFYQGLNDRIKMLYTEIASALSYVTPELLAVDEETLKQYLKDSKDLQLYAHALDEVNRERPHILSES
EEAILAQASEALGASSNTFGMLNNADLEFPSIKDENREEVEITHGRYIRFLESSDRRVREEAFKAVYDTYGKFKNTFAST
LSGTVKKDNFSAKVRNYESARHAALSANNIPEEVYDNLVATVNEYLPLLQRYIDLRKKVLGVDELHMYDLYTPLVQDVKM
EIPYSEAKDYLLKGLAPLGEEYISILKEGFENRWVDVHENKGKRSGAYSSGTYGTNPYILMNWQDNVNNLFTLAHEFGHS
VHSYYTRKEQPYPYGDYSIFVAEVASTCNEALLNDYLLKTIDDEKKRLYLLNHYLEGFRGTVFRQTMFAEFEHEIHVRAQ
NGEPLTPELLTKLYYDLNKKYFGDNLVIDEEIGLEWARIPHFYYNYYVYQYATGFSAAAALSKQILEEGDAAVERYLGFL
KAGSSDYPIEVLKRAGVDMTTAEPIKEALEVFKEKLEEMERLLEKN

Nucleotide


Download         Length: 1821 bp        

>NTDB_id=806392 P5663_RS19500 WP_277716943.1 3672177..3673997(-) (pepF) [Priestia flexa strain PRO116]
ATGAGTGAACAATCCACGGTGAAAAAGCTGCCAAATCGCAGTGAAATTAAAGTAGAAGATACATGGAGATTAGAAGATAT
TTTTGAAACAGATGAAGCGTGGGAGAAAGAATTTCAAGCTGTTAAAGCGTTAGTTCCGGAAATGGAACAATATCGCGGCA
AGCTTGGAGAATCAGCAGACACGCTTTTTAAAGCACTTCAGCAGCAAGATGAACTAACAATGCGGGTCAGCAAGCTTTAT
ACATATGCACATATGAGGTATGACCAAGATACAACGAACTCATTCTATCAAGGATTAAATGATCGAATTAAAATGTTGTA
TACAGAAATTGCGAGTGCGTTATCTTACGTCACGCCTGAACTATTAGCAGTAGATGAGGAAACGCTAAAACAATATTTAA
AAGATAGCAAGGATTTACAGCTATATGCACATGCGCTGGATGAAGTGAATCGTGAGCGTCCTCATATCCTTTCTGAGAGT
GAAGAAGCTATTCTAGCACAGGCATCTGAAGCGCTAGGAGCATCAAGTAATACGTTCGGTATGCTGAATAATGCTGATTT
AGAGTTTCCATCTATTAAAGATGAAAACAGGGAAGAAGTGGAGATTACCCACGGTCGTTATATTCGGTTTTTAGAAAGCA
GTGATCGACGCGTTAGAGAAGAAGCGTTTAAAGCCGTCTATGATACGTATGGAAAGTTTAAAAATACATTTGCGAGTACT
CTTAGCGGAACGGTTAAAAAAGATAACTTTAGCGCTAAGGTCCGTAACTACGAATCAGCTCGCCATGCAGCTCTAAGCGC
AAACAATATTCCAGAAGAGGTATATGATAATTTAGTTGCAACGGTAAATGAATATCTGCCTCTATTACAGCGCTATATTG
ACCTACGAAAGAAAGTGTTAGGTGTTGATGAGCTTCACATGTATGATCTGTATACACCGCTTGTGCAAGACGTCAAAATG
GAAATACCATATAGCGAAGCAAAAGATTATTTATTAAAAGGTTTGGCGCCGCTTGGAGAAGAGTACATTTCCATTTTAAA
AGAAGGATTTGAAAATCGCTGGGTTGATGTGCACGAAAACAAAGGAAAGCGAAGCGGTGCTTATTCTTCTGGAACATATG
GAACAAATCCATATATTTTAATGAACTGGCAGGACAATGTGAACAATCTTTTCACATTAGCTCATGAGTTTGGTCACTCA
GTGCACAGTTACTATACGCGTAAAGAACAGCCTTACCCATACGGTGATTATTCAATCTTTGTCGCTGAAGTCGCATCTAC
GTGTAACGAAGCCCTATTAAATGATTATTTATTGAAAACAATCGATGATGAAAAGAAACGATTATACTTATTAAATCATT
ATTTAGAAGGCTTCCGCGGTACCGTGTTCCGTCAAACGATGTTTGCTGAATTTGAGCATGAAATTCACGTTCGGGCTCAA
AATGGTGAACCGCTAACACCAGAGCTGCTAACAAAGTTATACTATGATTTAAATAAAAAGTACTTTGGTGATAATTTAGT
CATTGATGAAGAGATTGGCTTAGAGTGGGCAAGAATTCCACATTTCTACTATAATTATTATGTGTATCAATACGCAACAG
GCTTCAGCGCAGCTGCAGCGCTAAGTAAGCAAATTCTTGAAGAAGGAGACGCGGCTGTTGAGCGTTACCTTGGCTTCTTA
AAAGCTGGAAGCTCTGATTATCCAATCGAAGTGCTAAAACGCGCAGGAGTGGATATGACAACTGCTGAACCAATCAAAGA
AGCATTAGAAGTGTTTAAAGAAAAGCTTGAAGAGATGGAACGTTTGTTAGAGAAAAACTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(120-189)

Peptidase family M3 (Peptidase_M3)

(211-590)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

49.076

98.185

0.482