Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   P5663_RS07310 Genome accession   NZ_CP120590
Coordinates   1388946..1390664 (+) Length   572 a.a.
NCBI ID   WP_025911489.1    Uniprot ID   A0A1N6N653
Organism   Priestia flexa strain PRO116     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1383946..1395664
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5663_RS07285 (P5663_07285) - 1384119..1384352 (+) 234 WP_025911499.1 exodeoxyribonuclease VII small subunit -
  P5663_RS07290 (P5663_07290) - 1384355..1385248 (+) 894 WP_061784665.1 polyprenyl synthetase family protein -
  P5663_RS07295 (P5663_07295) dxs 1385565..1387466 (+) 1902 WP_277717390.1 1-deoxy-D-xylulose-5-phosphate synthase -
  P5663_RS07300 (P5663_07300) - 1387463..1388293 (+) 831 WP_025911493.1 TlyA family RNA methyltransferase -
  P5663_RS07305 (P5663_07305) ahrC 1388480..1388929 (+) 450 WP_025911491.1 transcriptional regulator AhrC/ArgR -
  P5663_RS07310 (P5663_07310) recN 1388946..1390664 (+) 1719 WP_025911489.1 DNA repair protein RecN Machinery gene
  P5663_RS07315 (P5663_07315) spoIVB 1390851..1392128 (+) 1278 WP_277717391.1 SpoIVB peptidase -
  P5663_RS07320 (P5663_07320) spo0A 1392354..1393145 (+) 792 WP_025911485.1 sporulation transcription factor Spo0A -
  P5663_RS07325 (P5663_07325) - 1393542..1393790 (+) 249 WP_224839988.1 DUF2798 domain-containing protein -
  P5663_RS07330 (P5663_07330) - 1393825..1395396 (-) 1572 WP_076512155.1 L-lactate permease -

Sequence

Protein


Download         Length: 572 a.a.        Molecular weight: 64299.83 Da        Isoelectric Point: 4.6409

>NTDB_id=806375 P5663_RS07310 WP_025911489.1 1388946..1390664(+) (recN) [Priestia flexa strain PRO116]
MLAELSIKNFAIIDELSVSFEKGLTVLTGETGAGKSIIIDAIHLLVGGRGSSEFVRHGTNRAEIEGLFLIEDEHPCYEKA
KQVGVEVEDGMVVLRRDITMNGKSICRINGKLVTLGILREVGQTLMDIHGQHEHQDLMNQDRHLILLDQYGGQKVEEALS
EYREVFATYTTLKKQLEQLTENEQQMAHRLDLIQFQLDEIKAADLQPNEDEQLMDERLKISNFEKIYTSLTDAYNALHGE
QRGLDWLGVAMNHAEEISNLEDTYGEISEVISSSFYQIEDVSYRIRQQLDLLEYDPKRLNFIESRLNEISHLKRKYGQSV
DEILEYAAQIEDEIDRIENRDTHVEKIKQKLSSVAEDLLVEAKNVSEVRKQLAAELTDSIHQELQELYMAKTIFNIVFEK
LPPNQADSELSGGSVKFTKDGIDSVEFYISTNPGEPLKPLAKVASGGELSRIMLALKSIFSKHQGVTSIIFDEVDTGVSG
RVAQSIGEKIHAISVDSQVLCISHLPQVAAMADTHLFISKQIKDDRTTTSVLPLNEEEKTKEIARMIAGAEITDLTQQHA
QELLGLAAKIKQ

Nucleotide


Download         Length: 1719 bp        

>NTDB_id=806375 P5663_RS07310 WP_025911489.1 1388946..1390664(+) (recN) [Priestia flexa strain PRO116]
TTGTTAGCAGAACTATCAATCAAAAACTTTGCCATCATTGATGAGCTTTCAGTATCGTTTGAAAAAGGCTTAACAGTTTT
AACAGGTGAAACAGGAGCTGGTAAGTCAATTATTATTGATGCCATTCATCTGCTTGTTGGTGGACGCGGTTCATCCGAGT
TTGTAAGGCATGGAACAAATCGAGCGGAAATCGAAGGGTTATTTCTAATTGAAGACGAGCACCCTTGCTATGAAAAAGCG
AAGCAGGTGGGAGTTGAAGTTGAAGATGGCATGGTGGTACTCAGACGAGATATTACCATGAATGGTAAGAGTATTTGTCG
TATTAATGGAAAGCTAGTCACGCTTGGCATTTTACGTGAAGTGGGTCAAACACTGATGGATATTCATGGTCAGCATGAGC
ATCAGGACTTAATGAACCAAGATCGACATCTAATTCTTCTTGACCAGTATGGAGGTCAGAAGGTTGAAGAAGCACTATCA
GAATATCGAGAAGTGTTTGCTACATATACAACGTTAAAGAAACAATTAGAACAATTAACAGAAAACGAACAGCAAATGGC
CCACCGCTTAGATTTAATTCAATTTCAGCTTGATGAAATAAAAGCGGCCGACCTTCAACCAAATGAAGATGAGCAACTGA
TGGATGAGCGCCTTAAAATTTCTAACTTTGAAAAGATTTATACGTCCTTAACGGATGCATATAACGCTCTTCATGGTGAG
CAAAGAGGACTAGATTGGCTAGGTGTAGCTATGAACCATGCAGAAGAAATTTCGAATTTAGAAGACACCTATGGCGAAAT
TTCAGAAGTCATATCATCAAGCTTTTATCAAATTGAAGATGTGTCTTATCGTATTCGCCAGCAGCTCGATTTATTAGAGT
ATGATCCAAAGCGTCTCAATTTTATTGAATCACGGCTAAATGAAATTAGTCATTTAAAGCGTAAATATGGTCAAAGCGTT
GATGAAATTCTAGAGTATGCAGCTCAAATTGAAGATGAAATTGATCGAATTGAGAACCGGGATACTCATGTTGAAAAAAT
TAAACAAAAACTGTCGAGCGTAGCAGAGGACTTGCTTGTTGAAGCGAAAAATGTTTCTGAGGTTAGAAAGCAGTTAGCTG
CGGAATTAACGGATAGTATTCATCAAGAGCTACAGGAGCTTTATATGGCTAAAACTATCTTTAATATCGTATTTGAAAAG
CTACCGCCAAACCAAGCTGATAGCGAACTGAGCGGTGGTTCTGTTAAGTTTACTAAGGATGGTATTGATTCAGTGGAGTT
TTATATTTCGACAAACCCAGGAGAGCCGCTAAAGCCACTTGCTAAAGTAGCTTCTGGTGGAGAGTTATCTCGTATTATGC
TTGCACTAAAAAGTATTTTCTCTAAGCATCAAGGTGTTACGTCCATTATTTTTGATGAAGTAGATACAGGAGTGAGCGGT
CGTGTCGCACAATCCATTGGTGAAAAAATTCACGCCATCTCTGTAGATTCCCAGGTGCTTTGTATTTCGCATCTTCCACA
GGTCGCTGCTATGGCGGATACACATTTGTTTATTTCAAAGCAAATCAAAGATGATCGCACTACAACATCTGTTTTACCGT
TAAACGAAGAAGAGAAAACAAAAGAAATTGCTCGCATGATTGCAGGAGCTGAAATAACCGATTTAACGCAGCAGCATGCC
CAAGAACTGTTAGGTCTAGCAGCAAAAATTAAACAATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1N6N653

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

61.955

100

0.621