Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilJ   Type   Machinery gene
Locus tag   P5663_RS00190 Genome accession   NZ_CP120590
Coordinates   35351..35470 (+) Length   39 a.a.
NCBI ID   WP_277717024.1    Uniprot ID   -
Organism   Priestia flexa strain PRO116     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 30351..40470
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5663_RS00175 (P5663_00175) - 32530..34044 (-) 1515 WP_078990327.1 glycine betaine uptake BCCT transporter -
  P5663_RS00180 (P5663_00180) - 34475..35083 (-) 609 WP_277717023.1 methyltransferase -
  P5663_RS00185 (P5663_00185) - 35244..35399 (+) 156 WP_153301207.1 hypothetical protein -
  P5663_RS00190 (P5663_00190) pilJ 35351..35470 (+) 120 WP_277717024.1 methyl-accepting chemotaxis protein Machinery gene
  P5663_RS00195 (P5663_00195) - 35694..36323 (-) 630 WP_076512905.1 nitroreductase family protein -
  P5663_RS00200 (P5663_00200) - 36573..37004 (+) 432 WP_025909887.1 YfmQ family protein -
  P5663_RS00205 (P5663_00205) - 37128..37751 (-) 624 WP_277717025.1 LysE family translocator -
  P5663_RS00210 (P5663_00210) - 38069..38740 (-) 672 WP_025909885.1 NAD(P)H-dependent oxidoreductase -
  P5663_RS00215 (P5663_00215) - 38896..39327 (+) 432 WP_277717026.1 hypothetical protein -
  P5663_RS00220 (P5663_00220) - 39517..40194 (+) 678 WP_025909883.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4160.64 Da        Isoelectric Point: 8.9001

>NTDB_id=806346 P5663_RS00190 WP_277717024.1 35351..35470(+) (pilJ) [Priestia flexa strain PRO116]
MGQAAHAGEHGKGFDVVAKEVRNLATRANESTKEVHSKV

Nucleotide


Download         Length: 120 bp        

>NTDB_id=806346 P5663_RS00190 WP_277717024.1 35351..35470(+) (pilJ) [Priestia flexa strain PRO116]
TTGGGTCAAGCAGCTCATGCTGGTGAACATGGAAAAGGCTTTGATGTAGTTGCAAAAGAAGTGCGAAACTTAGCTACCCG
AGCAAACGAATCAACAAAAGAAGTTCACAGTAAAGTATAA

Domains

Predicted by InterproScan.

Methyl-accepting chemotaxis protein (MCP) signalling domain (MCPsignal)

(4-37)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilJ Synechocystis sp. PCC 6803

56.757

94.872

0.538