Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   P5628_RS21185 Genome accession   NZ_CP120577
Coordinates   4087068..4088180 (+) Length   370 a.a.
NCBI ID   WP_015715082.1    Uniprot ID   A0A8E0S8Z1
Organism   Bacillus subtilis strain PRO53     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4082068..4093180
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5628_RS21160 (P5628_21160) rnpA 4082778..4083128 (-) 351 WP_021481107.1 ribonuclease P protein component -
  P5628_RS21165 (P5628_21165) rpmH 4083280..4083414 (-) 135 WP_003178075.1 50S ribosomal protein L34 -
  P5628_RS21170 (P5628_21170) dnaA 4084041..4085381 (+) 1341 WP_003242674.1 chromosomal replication initiator protein DnaA -
  P5628_RS21175 (P5628_21175) dnaN 4085570..4086706 (+) 1137 WP_003242509.1 DNA polymerase III subunit beta -
  P5628_RS21180 (P5628_21180) rlbA 4086837..4087052 (+) 216 WP_003226810.1 ribosome maturation protein RlbA -
  P5628_RS21185 (P5628_21185) recF 4087068..4088180 (+) 1113 WP_015715082.1 DNA replication/repair protein RecF Machinery gene
  P5628_RS21190 (P5628_21190) remB 4088198..4088443 (+) 246 WP_003219266.1 extracellular matrix regulator RemB -
  P5628_RS21195 (P5628_21195) gyrB 4088498..4090414 (+) 1917 WP_277709721.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  P5628_RS21200 (P5628_21200) gyrA 4090626..4093091 (+) 2466 WP_038828068.1 DNA topoisomerase (ATP-hydrolyzing) subunit A -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42318.37 Da        Isoelectric Point: 7.3661

>NTDB_id=806344 P5628_RS21185 WP_015715082.1 4087068..4088180(+) (recF) [Bacillus subtilis strain PRO53]
MYIQNLELTSYRNYDHAELQFENKVNVIIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDKDYAKIEGRVMKQNGA
IPMQLVISKKGKKGKVNHIEQQKLSQYVGALNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSPVYLHDLSLYQKILSQR
NHFLKQLQTRKQTDRTMLDVLTDQLVEVAAKVVVKRLQFTAQLEKWAQPIHAGISRGLEELTLKYHTALDVSDPLELSKI
GDSYQEAFSKLREKEIERGVTLSGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVDGIDHETLRQAGMFRVQNGALVK

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=806344 P5628_RS21185 WP_015715082.1 4087068..4088180(+) (recF) [Bacillus subtilis strain PRO53]
TTGTATATCCAGAACTTAGAACTGACATCTTACCGCAACTACGACCATGCTGAACTTCAATTTGAAAATAAAGTAAATGT
GATCATCGGAGAAAACGCCCAGGGGAAGACAAACCTCATGGAGGCGATCTATGTCTTGTCCATGGCGAAATCGCACCGGA
CATCAAATGACAAAGAACTTATACGGTGGGACAAAGACTATGCTAAAATAGAGGGAAGAGTGATGAAGCAAAACGGGGCA
ATCCCGATGCAGCTCGTCATCTCCAAAAAGGGTAAAAAGGGCAAGGTCAATCATATTGAACAGCAAAAGCTCAGCCAGTA
TGTCGGGGCCCTCAACACCATTATGTTCGCGCCGGAAGATTTAAATCTTGTAAAAGGAAGCCCTCAAGTGAGAAGGCGGT
TTCTTGACATGGAAATCGGACAGGTTTCTCCCGTCTATCTTCATGATCTTTCTCTTTACCAGAAAATCCTTTCCCAGCGG
AATCATTTTTTGAAACAGCTGCAAACAAGAAAACAAACTGACCGGACGATGCTCGATGTTCTGACCGATCAGCTTGTAGA
AGTTGCAGCAAAAGTCGTCGTAAAACGCCTGCAGTTTACAGCACAGCTCGAGAAATGGGCGCAGCCCATCCATGCAGGCA
TCTCAAGAGGGCTTGAAGAACTGACCCTGAAATACCATACAGCTCTTGATGTATCAGATCCCCTAGAGTTGTCGAAAATA
GGAGATAGCTATCAAGAAGCGTTTTCTAAATTAAGAGAAAAAGAAATTGAGCGTGGTGTGACGCTGTCAGGGCCTCATCG
CGATGATGTTCTTTTCTATGTGAACGGACGCGATGTGCAGACGTATGGTTCTCAAGGACAGCAGCGAACAACGGCGTTGT
CCCTTAAGCTGGCGGAGATTGACCTGATCCATGAAGAAATCGGAGAATATCCCATTTTACTATTGGATGATGTACTGAGT
GAACTGGATGATTATCGCCAGTCACACTTGCTTCATACGATCCAAGGCCGTGTACAAACGTTTGTCACAACGACAAGCGT
TGATGGCATTGATCACGAAACCTTACGTCAAGCAGGAATGTTCCGTGTGCAAAATGGTGCGTTAGTGAAGTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-350)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

99.73

100

0.997