Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   P5628_RS16260 Genome accession   NZ_CP120577
Coordinates   3101903..3102547 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis strain PRO53     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3096903..3107547
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5628_RS16225 (P5628_16225) mrpB 3098095..3098526 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  P5628_RS16230 (P5628_16230) mrpC 3098526..3098867 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  P5628_RS16235 (P5628_16235) mrpD 3098860..3100341 (+) 1482 WP_041850587.1 Na+/H+ antiporter subunit D -
  P5628_RS16240 (P5628_16240) mrpE 3100347..3100823 (+) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  P5628_RS16245 (P5628_16245) mrpF 3100823..3101107 (+) 285 WP_277709714.1 Na(+)/H(+) antiporter subunit F1 -
  P5628_RS16250 (P5628_16250) mnhG 3101091..3101465 (+) 375 WP_015714623.1 monovalent cation/H(+) antiporter subunit G -
  P5628_RS16255 (P5628_16255) yuxO 3101504..3101884 (-) 381 WP_014477831.1 hotdog fold thioesterase -
  P5628_RS16260 (P5628_16260) comA 3101903..3102547 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  P5628_RS16265 (P5628_16265) comP 3102628..3104946 (-) 2319 WP_161621287.1 sensor histidine kinase Regulator
  P5628_RS16270 (P5628_16270) comX 3104966..3105142 (-) 177 WP_041906074.1 competence pheromone ComX -
  P5628_RS16275 (P5628_16275) - 3105157..3105996 (-) 840 WP_347176368.1 polyprenyl synthetase family protein -
  P5628_RS16280 (P5628_16280) degQ 3106182..3106322 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  P5628_RS16285 (P5628_16285) - 3106544..3106669 (+) 126 WP_161621781.1 hypothetical protein -
  P5628_RS16290 (P5628_16290) - 3106785..3107153 (+) 369 WP_017695529.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=806327 P5628_RS16260 WP_003220716.1 3101903..3102547(-) (comA) [Bacillus subtilis strain PRO53]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=806327 P5628_RS16260 WP_003220716.1 3101903..3102547(-) (comA) [Bacillus subtilis strain PRO53]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1