Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   P5628_RS14280 Genome accession   NZ_CP120577
Coordinates   2713418..2714164 (-) Length   248 a.a.
NCBI ID   WP_021480242.1    Uniprot ID   -
Organism   Bacillus subtilis strain PRO53     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2708418..2719164
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5628_RS14255 (P5628_14255) mreC 2708824..2709696 (-) 873 WP_003222609.1 rod shape-determining protein MreC -
  P5628_RS14260 (P5628_14260) mreB 2709727..2710740 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  P5628_RS14265 (P5628_14265) radC 2710832..2711527 (-) 696 WP_003246034.1 DNA repair protein RadC -
  P5628_RS14270 (P5628_14270) maf 2711564..2712133 (-) 570 WP_049141066.1 Maf family nucleotide pyrophosphatase -
  P5628_RS14275 (P5628_14275) spoIIB 2712286..2713284 (-) 999 WP_277708871.1 stage II sporulation protein SpoIIB -
  P5628_RS14280 (P5628_14280) comC 2713418..2714164 (-) 747 WP_021480242.1 A24 family peptidase Machinery gene
  P5628_RS14285 (P5628_14285) folC 2714305..2715597 (-) 1293 WP_041339279.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  P5628_RS14290 (P5628_14290) valS 2715657..2718299 (-) 2643 WP_277708872.1 valine--tRNA ligase -
  P5628_RS14295 (P5628_14295) - 2718747..2718938 (+) 192 WP_003222590.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26390.98 Da        Isoelectric Point: 9.7803

>NTDB_id=806322 P5628_RS14280 WP_021480242.1 2713418..2714164(-) (comC) [Bacillus subtilis strain PRO53]
MLSILIIFGLILGSFYYTAGCRIPLHLSIIAPRSSCPFCRRTLTPAELIPILSFLFQKGKCKSCGHKISFMYPTAELVTA
CLFAAAGIRFGTSLELFPAVVFISLLIIVAVTDIHFMLIPNRILIFFLPFLAAARLISPLDSWYAGLLGAAAGFLFLAVI
AAITHGGVGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGAAAVLTGRLAKRQPLPFAPAIAAGSILAYLYGDSIIS
FYIKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=806322 P5628_RS14280 WP_021480242.1 2713418..2714164(-) (comC) [Bacillus subtilis strain PRO53]
ATGCTATCCATTCTTATTATCTTTGGGCTGATCCTTGGTTCTTTTTACTATACGGCCGGGTGCCGTATCCCCTTACATCT
ATCTATTATTGCGCCCCGTTCATCATGCCCGTTTTGCCGGCGGACATTAACTCCTGCAGAATTAATTCCCATCCTGTCAT
TCCTATTTCAAAAAGGTAAATGTAAAAGCTGCGGGCATAAGATTTCTTTTATGTATCCCACAGCAGAGCTTGTGACAGCG
TGTTTATTTGCTGCCGCAGGAATACGCTTTGGCACATCGCTGGAACTGTTTCCCGCTGTGGTGTTTATCTCTCTTCTCAT
TATTGTTGCAGTGACAGATATTCATTTTATGCTGATTCCAAATCGAATATTGATTTTCTTTCTTCCCTTTTTGGCGGCCG
CGAGATTGATTTCTCCGCTTGATTCCTGGTATGCAGGCCTGTTAGGTGCGGCAGCCGGATTTCTGTTTCTGGCTGTAATT
GCCGCAATCACCCATGGGGGAGTAGGGGGAGGAGATATTAAATTATTTGCGGTGATTGGCTTTGTGCTTGGTGTGAAGAT
GCTGGCAGCTGCCTTTTTCTTTTCTGTTTTGATAGGTGCATTATATGGAGCGGCAGCTGTTCTGACTGGTAGACTCGCTA
AAAGGCAGCCGCTTCCCTTCGCCCCCGCTATAGCCGCAGGGAGCATTTTAGCCTATTTATACGGTGACTCTATCATTTCT
TTTTATATCAAAATGGCATTGGGCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)

Type IV leader peptidase family (Peptidase_A24)

(101-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

98.387

100

0.984