Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   P5628_RS12125 Genome accession   NZ_CP120577
Coordinates   2345876..2346679 (-) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus subtilis strain PRO53     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2340876..2351679
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5628_RS12100 (P5628_12100) glpQ 2342022..2342753 (-) 732 WP_049141221.1 glycerophosphodiester phosphodiesterase -
  P5628_RS12105 (P5628_12105) yqiI 2342832..2343452 (-) 621 WP_072173938.1 N-acetylmuramoyl-L-alanine amidase -
  P5628_RS12110 (P5628_12110) yqiH 2343467..2343760 (-) 294 WP_003230284.1 lipoprotein -
  P5628_RS12115 (P5628_12115) - 2344068..2344220 (+) 153 WP_014480226.1 hypothetical protein -
  P5628_RS12120 (P5628_12120) yqiG 2344293..2345411 (+) 1119 WP_017696437.1 NADH-dependent flavin oxidoreductase -
  P5628_RS12125 (P5628_12125) spo0A 2345876..2346679 (-) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  P5628_RS12130 (P5628_12130) spoIVB 2346965..2348245 (-) 1281 WP_021480004.1 SpoIVB peptidase -
  P5628_RS12135 (P5628_12135) recN 2348420..2350150 (-) 1731 WP_017696435.1 DNA repair protein RecN Machinery gene
  P5628_RS12140 (P5628_12140) argR 2350185..2350634 (-) 450 WP_014114358.1 arginine repressor ArgR -
  P5628_RS12145 (P5628_12145) yqxC 2350732..2351577 (-) 846 WP_003230264.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=806303 P5628_RS12125 WP_003226427.1 2345876..2346679(-) (spo0A) [Bacillus subtilis strain PRO53]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=806303 P5628_RS12125 WP_003226427.1 2345876..2346679(-) (spo0A) [Bacillus subtilis strain PRO53]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGCTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATTATGCCGCATTTAGACGGACTTGCGGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGACAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCGCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTTAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGCCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTTGGTTATACTGTC
AGCATGACAAAAGCTAAACCGACAAATTCGGAATTCATTGCAATGGTTGCGGATAAGCTGAGATTAGAACATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1