Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   P5628_RS05510 Genome accession   NZ_CP120577
Coordinates   1066633..1067211 (+) Length   192 a.a.
NCBI ID   WP_029317573.1    Uniprot ID   -
Organism   Bacillus subtilis strain PRO53     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1061633..1072211
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5628_RS05490 (P5628_05490) hemAT 1062144..1063442 (-) 1299 WP_277715518.1 heme-based aerotactic transducer HemAT -
  P5628_RS05495 (P5628_05495) yhfW 1063581..1065110 (-) 1530 WP_212082909.1 FAD-dependent oxidoreductase -
  P5628_RS05500 (P5628_05500) yhxC 1065222..1066079 (+) 858 WP_021479616.1 SDR family oxidoreductase -
  P5628_RS05505 (P5628_05505) yhzC 1066107..1066340 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  P5628_RS05510 (P5628_05510) comK 1066633..1067211 (+) 579 WP_029317573.1 competence transcription factor ComK Regulator
  P5628_RS05515 (P5628_05515) yhxD 1067256..1068155 (-) 900 WP_003245421.1 SDR family oxidoreductase -
  P5628_RS05520 (P5628_05520) yhjA 1068372..1068641 (+) 270 WP_153255872.1 excalibur calcium-binding domain-containing protein -
  P5628_RS05525 (P5628_05525) yhjB 1068685..1070154 (-) 1470 WP_213419323.1 sodium:solute symporter -
  P5628_RS05530 (P5628_05530) yhjC 1070151..1070351 (-) 201 WP_003224377.1 DUF3311 domain-containing protein -
  P5628_RS05535 (P5628_05535) - 1070550..1070921 (-) 372 WP_014476361.1 hypothetical protein -
  P5628_RS05540 (P5628_05540) yhjE 1071073..1071696 (+) 624 WP_277709381.1 TVP38/TMEM64 family protein -
  P5628_RS05545 (P5628_05545) lepB 1071698..1072204 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22457.70 Da        Isoelectric Point: 7.7156

>NTDB_id=806283 P5628_RS05510 WP_029317573.1 1066633..1067211(+) (comK) [Bacillus subtilis strain PRO53]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSRIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=806283 P5628_RS05510 WP_029317573.1 1066633..1067211(+) (comK) [Bacillus subtilis strain PRO53]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAGAATTATTGAAAAAGATTGCGTGTTTTATGTCAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCGAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATACCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGGCAGGAATTTATGCTGTACCCGAAGGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAGCGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

99.479

100

0.995