Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimT   Type   Machinery gene
Locus tag   RKQ54_RS16460 Genome accession   NZ_CP134589
Coordinates   3379200..3379715 (+) Length   171 a.a.
NCBI ID   WP_000477151.1    Uniprot ID   V5VA61
Organism   Acinetobacter baumannii strain XH1024     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3374200..3384715
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RKQ54_RS16440 (RKQ54_16450) - 3374528..3375988 (+) 1461 WP_000004971.1 amino acid permease -
  RKQ54_RS16445 (RKQ54_16455) - 3376265..3377470 (+) 1206 WP_005127974.1 RtcB family protein -
  RKQ54_RS16450 (RKQ54_16460) - 3377474..3377632 (+) 159 WP_000692859.1 hypothetical protein -
  RKQ54_RS16455 (RKQ54_16465) omp38 3377757..3378818 (-) 1062 WP_005127972.1 outer membrane protein Omp38 -
  RKQ54_RS16460 (RKQ54_16470) fimT 3379200..3379715 (+) 516 WP_000477151.1 GspH/FimT family pseudopilin Machinery gene
  RKQ54_RS16465 (RKQ54_16475) - 3379824..3380999 (+) 1176 WP_000129968.1 thiolase family protein -
  RKQ54_RS16470 (RKQ54_16480) - 3381126..3381569 (+) 444 WP_001176580.1 VOC family protein -
  RKQ54_RS16475 (RKQ54_16485) - 3381612..3381965 (-) 354 WP_000457779.1 multidrug efflux SMR transporter -
  RKQ54_RS16480 (RKQ54_16490) - 3382047..3382532 (-) 486 WP_000935248.1 DUF934 domain-containing protein -
  RKQ54_RS16485 (RKQ54_16495) - 3382525..3384168 (-) 1644 WP_000281766.1 nitrite/sulfite reductase -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19606.86 Da        Isoelectric Point: 8.8196

>NTDB_id=806191 RKQ54_RS16460 WP_000477151.1 3379200..3379715(+) (fimT) [Acinetobacter baumannii strain XH1024]
MFKSPGFTIVELTITLVILVIMSVIAIPLYHQFMASVELKNTPRILTIHIQKAKYDAIIRHKNVVLCPSSDQLVCNTNWD
NRVISFVDNNRNLQHDLNEELLTSIDLNHHYGSMKLQRFGKKQNSIIFQGSSGLPIESNGSFIYCSYDQLKNFKLILSKM
GHVRLEELKNC

Nucleotide


Download         Length: 516 bp        

>NTDB_id=806191 RKQ54_RS16460 WP_000477151.1 3379200..3379715(+) (fimT) [Acinetobacter baumannii strain XH1024]
ATGTTTAAATCTCCTGGTTTTACTATAGTTGAGCTCACTATAACACTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAACTAAAAAATACGCCGCGCATACTCACAATTCATATACAAAAAGCCA
AATATGACGCAATTATTAGGCATAAGAATGTTGTTCTTTGTCCAAGTTCTGATCAATTGGTCTGCAATACGAATTGGGAT
AACCGCGTAATCAGCTTTGTAGATAATAACCGTAATCTACAGCATGATTTAAATGAAGAATTATTGACCTCTATAGATCT
TAACCATCACTACGGTTCTATGAAATTACAACGTTTTGGAAAAAAACAAAATAGTATTATTTTTCAAGGTAGTTCTGGAC
TACCCATCGAGTCGAATGGCAGTTTTATCTATTGTTCTTATGACCAGCTTAAAAACTTTAAATTAATTCTTAGCAAAATG
GGCCATGTGCGCTTAGAAGAGCTTAAAAATTGTTAG

Domains

Predicted by InterProScan.

Type II transport protein GspH (GspH)

(50-149)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB V5VA61

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimT Acinetobacter baylyi ADP1

43.976

97.076

0.427