Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   RKQ55_RS09760 Genome accession   NZ_CP134586
Coordinates   2068344..2068979 (-) Length   211 a.a.
NCBI ID   WP_000264037.1    Uniprot ID   A0ABX6CFI5
Organism   Acinetobacter baumannii strain XH1026     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2063344..2073979
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RKQ55_RS09735 (RKQ55_09770) - 2063401..2064381 (-) 981 WP_001075416.1 DNA polymerase III subunit delta' -
  RKQ55_RS09740 (RKQ55_09775) kdsB 2064393..2065154 (-) 762 WP_000680692.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  RKQ55_RS09745 (RKQ55_09780) lpxK 2065164..2066174 (-) 1011 WP_005128796.1 tetraacyldisaccharide 4'-kinase -
  RKQ55_RS09750 (RKQ55_09785) msbA 2066177..2067903 (-) 1727 Protein_1899 lipid A export permease/ATP-binding protein MsbA -
  RKQ55_RS09755 (RKQ55_09790) - 2067900..2068328 (-) 429 WP_000669684.1 biopolymer transporter ExbD -
  RKQ55_RS09760 (RKQ55_09795) exbB 2068344..2068979 (-) 636 WP_000264037.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  RKQ55_RS09765 (RKQ55_09800) - 2069029..2069916 (-) 888 WP_000023429.1 ParB/RepB/Spo0J family partition protein -
  RKQ55_RS09770 (RKQ55_09805) - 2069913..2070695 (-) 783 WP_000057212.1 ParA family protein -
  RKQ55_RS09775 (RKQ55_09810) rsmG 2070717..2071349 (-) 633 WP_000553193.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  RKQ55_RS09780 (RKQ55_09815) murU 2071437..2072126 (-) 690 WP_005111008.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU -
  RKQ55_RS09785 (RKQ55_09820) - 2072126..2073139 (-) 1014 WP_005111009.1 aminoglycoside phosphotransferase family protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23198.10 Da        Isoelectric Point: 6.4861

>NTDB_id=806101 RKQ55_RS09760 WP_000264037.1 2068344..2068979(-) (exbB) [Acinetobacter baumannii strain XH1026]
MWELVKAGGWLMLPLILCSILTVAISIERFVRLRRSQVLPKVLMNDGSADISVVITNLEQDTNAQSTALGNILKAGFEHQ
EHGEQFARAQMEAMASQEISYLEKNINFLGTLSAIAPLLGLLGTVVGIIESFLVIDFGSAGSPSLMIPGISKALITTAVG
MLIAIPALISYRYFQRVVQDYIAELEQQSTLFHASLFYKRSSVMQEHRRVG

Nucleotide


Download         Length: 636 bp        

>NTDB_id=806101 RKQ55_RS09760 WP_000264037.1 2068344..2068979(-) (exbB) [Acinetobacter baumannii strain XH1026]
ATGTGGGAACTTGTGAAAGCGGGCGGCTGGTTAATGCTGCCTTTAATTTTGTGTTCAATTTTAACCGTCGCAATTAGTAT
TGAGCGTTTTGTACGTTTAAGACGTTCACAAGTTTTACCTAAAGTACTAATGAATGATGGCAGTGCAGATATTTCTGTTG
TCATAACAAATTTGGAACAGGATACTAATGCGCAAAGCACGGCATTGGGCAATATTCTAAAAGCTGGTTTTGAGCATCAG
GAACATGGCGAACAATTTGCTCGAGCACAAATGGAAGCTATGGCTTCTCAAGAAATTTCTTATTTAGAAAAAAATATTAA
CTTCTTAGGGACCTTAAGTGCTATAGCGCCTCTACTAGGGCTGCTTGGAACAGTTGTGGGAATTATTGAGTCTTTTTTGG
TTATTGATTTTGGTTCGGCAGGTAGTCCTAGTTTAATGATTCCCGGTATTTCCAAGGCTTTGATCACAACAGCAGTTGGT
ATGCTCATTGCAATTCCTGCACTTATTTCCTATCGATATTTTCAAAGAGTAGTGCAAGATTATATTGCTGAGTTAGAGCA
ACAATCTACGCTATTTCATGCCTCATTGTTTTACAAACGTTCTTCAGTCATGCAAGAACATCGCCGCGTTGGTTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

43.455

90.521

0.393