Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   RKQ55_RS05250 Genome accession   NZ_CP134586
Coordinates   1121099..1122040 (+) Length   313 a.a.
NCBI ID   WP_030423600.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain XH1026     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1116099..1127040
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RKQ55_RS05240 (RKQ55_05270) basA 1116520..1118367 (+) 1848 WP_005128206.1 acinetobactin non-ribosomal peptide synthetase subunit BasA -
  RKQ55_RS05245 (RKQ55_05275) basB 1118438..1120468 (-) 2031 WP_140953793.1 acinetobactin non-ribosomal peptide synthetase subunit BasB -
  RKQ55_RS05250 (RKQ55_05280) ceuB 1121099..1122040 (+) 942 WP_030423600.1 ferric acinetobactin ABC transporter permease subunit BauD Machinery gene
  RKQ55_RS05255 (RKQ55_05285) bauC 1122040..1122987 (+) 948 WP_005128211.1 ferric acinetobactin ABC transporter permease subunit BauC -
  RKQ55_RS05260 (RKQ55_05290) bauE 1122984..1123754 (+) 771 WP_005128212.1 ferric acinetobactin ABC transporter ATP-binding protein BauE -
  RKQ55_RS05265 (RKQ55_05295) bauB 1123761..1124729 (+) 969 WP_005128213.1 siderophore-binding periplasmic lipoprotein BauB -

Sequence

Protein


Download         Length: 313 a.a.        Molecular weight: 33933.99 Da        Isoelectric Point: 8.4665

>NTDB_id=806087 RKQ55_RS05250 WP_030423600.1 1121099..1122040(+) (ceuB) [Acinetobacter baumannii strain XH1026]
MQFGLFCIFIILCICSLLLGAEPIQWTTLFSFSHESWLTLTASRIPRLITIVLTGIGLAVCGVILQHIVRNKFVEPETSG
GLDAAKLGILVSLTLVPVTSTLSKMIFAIIFCFIASLIYIAIIRRIRFRNTVLVPVIGLMYGSVLSALAEFYAYRFNILQ
SMQGWLLGDFSKIVQGHYEVIYIIFPIVALTYLFAHRFTVIGMGEEMASSLGLSYAAIAAIGLILVAITVSTTVITVGAI
PFVGLVVPNLVALKYGENLAKTLPIVALGGASLLLICDILGRSIIYPFEVPIGLTAGGVGGIIFLILILREFR

Nucleotide


Download         Length: 942 bp        

>NTDB_id=806087 RKQ55_RS05250 WP_030423600.1 1121099..1122040(+) (ceuB) [Acinetobacter baumannii strain XH1026]
ATGCAATTCGGCTTATTCTGTATTTTTATCATTTTATGTATTTGCTCGTTATTGCTCGGGGCTGAGCCAATACAGTGGAC
TACCTTATTTTCTTTTTCTCATGAGAGTTGGCTCACTCTTACAGCCAGCCGTATTCCTCGTTTAATTACTATTGTGCTTA
CAGGTATCGGGTTGGCGGTATGTGGCGTCATCTTGCAACATATTGTGCGTAACAAGTTTGTTGAACCGGAAACATCGGGC
GGTTTAGATGCTGCCAAACTGGGAATTTTAGTGTCGTTAACTTTAGTTCCGGTAACCAGCACGCTGAGCAAGATGATATT
TGCGATCATTTTTTGTTTTATTGCCAGCTTAATTTATATCGCAATTATTCGGCGGATCCGTTTTAGAAATACGGTTTTAG
TACCAGTTATTGGTTTGATGTACGGCAGTGTACTGAGTGCCTTAGCTGAGTTTTATGCCTATCGCTTTAATATTTTACAA
AGTATGCAAGGGTGGCTTTTAGGAGATTTTTCAAAAATTGTCCAAGGCCACTATGAAGTTATTTACATTATTTTTCCGAT
TGTTGCCCTGACTTATCTTTTCGCACACCGCTTTACCGTAATTGGTATGGGGGAAGAGATGGCTTCTAGTTTGGGACTCA
GTTATGCAGCTATAGCCGCCATTGGTTTGATACTGGTTGCCATTACAGTTTCGACCACAGTAATTACGGTTGGTGCTATT
CCTTTTGTCGGGCTCGTGGTCCCCAATTTAGTCGCACTGAAATACGGAGAAAACTTAGCTAAAACCTTGCCGATTGTGGC
TTTGGGTGGGGCATCTCTATTACTGATTTGTGACATTCTTGGCCGCTCAATCATTTACCCATTTGAAGTGCCGATCGGAC
TTACCGCAGGTGGTGTGGGGGGAATTATTTTCCTCATCCTCATTTTGAGGGAGTTCAGATAA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(9-310)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

44.257

94.569

0.419