Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimT   Type   Machinery gene
Locus tag   RKQ55_RS03155 Genome accession   NZ_CP134586
Coordinates   659027..659542 (-) Length   171 a.a.
NCBI ID   WP_000477151.1    Uniprot ID   V5VA61
Organism   Acinetobacter baumannii strain XH1026     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 654027..664542
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RKQ55_RS03130 (RKQ55_03135) - 654573..656216 (+) 1644 WP_000281764.1 nitrite/sulfite reductase -
  RKQ55_RS03135 (RKQ55_03140) - 656209..656694 (+) 486 WP_000935247.1 DUF934 domain-containing protein -
  RKQ55_RS03140 (RKQ55_03145) - 656777..657130 (+) 354 WP_163048339.1 multidrug efflux SMR transporter -
  RKQ55_RS03145 (RKQ55_03150) - 657173..657616 (-) 444 WP_163048340.1 VOC family protein -
  RKQ55_RS03150 (RKQ55_03155) - 657743..658918 (-) 1176 WP_000129968.1 thiolase family protein -
  RKQ55_RS03155 (RKQ55_03160) fimT 659027..659542 (-) 516 WP_000477151.1 GspH/FimT family pseudopilin Machinery gene
  RKQ55_RS03160 (RKQ55_03165) omp38 659924..660955 (+) 1032 WP_057693493.1 outer membrane protein Omp38 -
  RKQ55_RS03165 (RKQ55_03170) - 661080..661238 (-) 159 WP_000692859.1 hypothetical protein -
  RKQ55_RS03170 (RKQ55_03175) - 661242..662447 (-) 1206 WP_000512701.1 RtcB family protein -
  RKQ55_RS03175 (RKQ55_03180) - 662724..664184 (-) 1461 WP_000004971.1 amino acid permease -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19606.86 Da        Isoelectric Point: 8.8196

>NTDB_id=806078 RKQ55_RS03155 WP_000477151.1 659027..659542(-) (fimT) [Acinetobacter baumannii strain XH1026]
MFKSPGFTIVELTITLVILVIMSVIAIPLYHQFMASVELKNTPRILTIHIQKAKYDAIIRHKNVVLCPSSDQLVCNTNWD
NRVISFVDNNRNLQHDLNEELLTSIDLNHHYGSMKLQRFGKKQNSIIFQGSSGLPIESNGSFIYCSYDQLKNFKLILSKM
GHVRLEELKNC

Nucleotide


Download         Length: 516 bp        

>NTDB_id=806078 RKQ55_RS03155 WP_000477151.1 659027..659542(-) (fimT) [Acinetobacter baumannii strain XH1026]
ATGTTTAAATCTCCTGGTTTTACTATAGTTGAGCTCACTATAACACTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAATTAAAAAATACGCCGCGCATACTCACAATTCATATACAAAAAGCCA
AATATGACGCAATTATTAGGCATAAGAATGTTGTTCTTTGTCCAAGTTCTGATCAATTGGTCTGCAATACGAATTGGGAT
AACCGCGTAATCAGCTTTGTAGATAATAACCGTAATCTACAGCATGATTTAAATGAAGAATTATTGACCTCTATAGATCT
TAACCATCACTACGGTTCTATGAAATTACAACGTTTTGGAAAAAAACAAAATAGTATTATTTTTCAAGGTAGTTCTGGAC
TACCCATCGAGTCGAATGGCAGTTTTATCTATTGTTCTTATGACCAGCTTAAAAACTTTAAATTAATTCTTAGCAAAATG
GGTCATGTACGCTTAGAAGAGCTTAAAAATTGTTAG

Domains

Predicted by InterProScan.

Type II transport protein GspH (GspH)

(50-149)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB V5VA61

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimT Acinetobacter baylyi ADP1

43.976

97.076

0.427