Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   P3S52_RS14660 Genome accession   NZ_CP120524
Coordinates   2770674..2770814 (-) Length   46 a.a.
NCBI ID   WP_340672917.1    Uniprot ID   -
Organism   Enterobacter roggenkampii strain 0-E     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2765674..2775814
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3S52_RS14635 (P3S52_14655) - 2766582..2767640 (-) 1059 WP_200448222.1 MerR family transcriptional regulator -
  P3S52_RS14640 (P3S52_14660) ychH 2767761..2768036 (-) 276 WP_008499505.1 stress-induced protein YchH -
  P3S52_RS14645 (P3S52_14665) pth 2768311..2768895 (+) 585 WP_023336005.1 aminoacyl-tRNA hydrolase -
  P3S52_RS14650 (P3S52_14670) ychF 2769022..2770116 (+) 1095 WP_003856650.1 redox-regulated ATPase YchF -
  P3S52_RS14655 (P3S52_14675) comJ 2770192..2770674 (-) 483 WP_032652283.1 competence protein ComJ -
  P3S52_RS14660 (P3S52_14680) nucA/comI 2770674..2770814 (-) 141 WP_340672917.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  P3S52_RS14665 (P3S52_14685) - 2771031..2775017 (-) 3987 Protein_2647 RHS repeat-associated core domain-containing protein -
  P3S52_RS14670 (P3S52_14690) - 2775021..2775461 (-) 441 WP_032652285.1 DcrB-related protein -

Sequence

Protein


Download         Length: 46 a.a.        Molecular weight: 4810.39 Da        Isoelectric Point: 4.4286

>NTDB_id=806027 P3S52_RS14660 WP_340672917.1 2770674..2770814(-) (nucA/comI) [Enterobacter roggenkampii strain 0-E]
MAMFKEGGDGASVRYIDPSDNRGAGSSIGNVLSELPDGTRIKVEVI

Nucleotide


Download         Length: 141 bp        

>NTDB_id=806027 P3S52_RS14660 WP_340672917.1 2770674..2770814(-) (nucA/comI) [Enterobacter roggenkampii strain 0-E]
ATGGCGATGTTTAAAGAAGGCGGTGATGGCGCTAGCGTAAGATATATAGATCCTAGTGACAACCGTGGTGCAGGTTCAAG
TATTGGTAATGTTTTATCAGAACTGCCAGATGGAACAAGAATAAAAGTCGAGGTAATATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(2-43)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

65.854

89.13

0.587