Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   RKQ56_RS10085 Genome accession   NZ_CP134583
Coordinates   2114528..2115163 (-) Length   211 a.a.
NCBI ID   WP_000264037.1    Uniprot ID   A0ABX6CFI5
Organism   Acinetobacter baumannii strain XH1032     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2109528..2120163
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RKQ56_RS10060 (RKQ56_10065) - 2109585..2110565 (-) 981 WP_001075416.1 DNA polymerase III subunit delta' -
  RKQ56_RS10065 (RKQ56_10070) kdsB 2110577..2111338 (-) 762 WP_000680698.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  RKQ56_RS10070 (RKQ56_10075) lpxK 2111348..2112358 (-) 1011 WP_032030211.1 tetraacyldisaccharide 4'-kinase -
  RKQ56_RS10075 (RKQ56_10080) msbA 2112361..2114087 (-) 1727 Protein_1964 lipid A export permease/ATP-binding protein MsbA -
  RKQ56_RS10080 (RKQ56_10085) - 2114084..2114512 (-) 429 WP_000669684.1 biopolymer transporter ExbD -
  RKQ56_RS10085 (RKQ56_10090) exbB 2114528..2115163 (-) 636 WP_000264037.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  RKQ56_RS10090 (RKQ56_10095) - 2115213..2116100 (-) 888 WP_000023429.1 ParB/RepB/Spo0J family partition protein -
  RKQ56_RS10095 (RKQ56_10100) - 2116097..2116879 (-) 783 WP_000057212.1 ParA family protein -
  RKQ56_RS10100 (RKQ56_10105) rsmG 2116901..2117533 (-) 633 WP_000553193.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  RKQ56_RS10105 (RKQ56_10110) murU 2117621..2118310 (-) 690 WP_000646456.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU -
  RKQ56_RS10110 (RKQ56_10115) - 2118310..2119323 (-) 1014 WP_001096106.1 aminoglycoside phosphotransferase family protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23198.10 Da        Isoelectric Point: 6.4861

>NTDB_id=806025 RKQ56_RS10085 WP_000264037.1 2114528..2115163(-) (exbB) [Acinetobacter baumannii strain XH1032]
MWELVKAGGWLMLPLILCSILTVAISIERFVRLRRSQVLPKVLMNDGSADISVVITNLEQDTNAQSTALGNILKAGFEHQ
EHGEQFARAQMEAMASQEISYLEKNINFLGTLSAIAPLLGLLGTVVGIIESFLVIDFGSAGSPSLMIPGISKALITTAVG
MLIAIPALISYRYFQRVVQDYIAELEQQSTLFHASLFYKRSSVMQEHRRVG

Nucleotide


Download         Length: 636 bp        

>NTDB_id=806025 RKQ56_RS10085 WP_000264037.1 2114528..2115163(-) (exbB) [Acinetobacter baumannii strain XH1032]
ATGTGGGAACTTGTGAAAGCGGGCGGCTGGTTAATGCTGCCTTTAATTTTGTGTTCAATTTTAACCGTCGCAATTAGTAT
TGAGCGTTTTGTACGTTTAAGACGTTCACAAGTTTTACCTAAAGTGTTAATGAATGATGGTAGTGCAGATATTTCTGTTG
TCATAACAAATTTGGAGCAGGATACTAATGCGCAAAGCACGGCATTGGGCAATATTCTAAAAGCTGGTTTTGAGCATCAG
GAACATGGCGAACAATTTGCGCGAGCACAAATGGAAGCTATGGCTTCTCAAGAAATTTCTTATTTAGAGAAAAATATTAA
CTTCTTAGGGACTTTAAGTGCTATAGCGCCTTTACTAGGACTGCTTGGAACAGTTGTGGGAATTATTGAGTCTTTTTTGG
TTATTGATTTTGGTTCGGCTGGTAGTCCTAGTTTAATGATTCCCGGTATTTCCAAGGCTTTGATCACAACAGCAGTTGGT
ATGCTCATTGCAATTCCTGCACTTATTTCCTATCGATATTTTCAAAGAGTAGTGCAAGATTATATTGCTGAGTTAGAGCA
ACAATCGACGCTATTTCATGCCTCATTGTTTTACAAACGTTCTTCAGTCATGCAAGAACATCGCCGCGTTGGTTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

43.455

90.521

0.393