Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   RKQ56_RS03335 Genome accession   NZ_CP134583
Coordinates   682663..683025 (+) Length   120 a.a.
NCBI ID   WP_000101096.1    Uniprot ID   A0ABN3ANQ3
Organism   Acinetobacter baumannii strain XH1032     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 677663..688025
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RKQ56_RS03320 (RKQ56_03320) - 680157..681275 (-) 1119 WP_001260821.1 efflux RND transporter periplasmic adaptor subunit -
  RKQ56_RS03325 (RKQ56_03325) - 681335..681973 (-) 639 WP_002027721.1 hypothetical protein -
  RKQ56_RS03330 (RKQ56_03330) pilG 682256..682639 (+) 384 WP_000389061.1 twitching motility response regulator PilG Regulator
  RKQ56_RS03335 (RKQ56_03335) pilH 682663..683025 (+) 363 WP_000101096.1 PleD family two-component system response regulator Machinery gene
  RKQ56_RS03340 (RKQ56_03340) - 683086..683622 (+) 537 WP_000729762.1 chemotaxis protein CheW -
  RKQ56_RS03345 (RKQ56_03345) - 683669..685747 (+) 2079 WP_000505936.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13479.47 Da        Isoelectric Point: 4.9102

>NTDB_id=806005 RKQ56_RS03335 WP_000101096.1 682663..683025(+) (pilH) [Acinetobacter baumannii strain XH1032]
MARILIVDDSPTETFRFKEILTKHGYDVLEASNGADGVTLAKAEQPDLVLMDVVMPGVNGFQATRQITRDEDTKHIPVVI
VSTKDQATDRVWGKRQGAIDYLIKPIEEKQLIDVIKQFLN

Nucleotide


Download         Length: 363 bp        

>NTDB_id=806005 RKQ56_RS03335 WP_000101096.1 682663..683025(+) (pilH) [Acinetobacter baumannii strain XH1032]
ATGGCACGTATTCTCATTGTTGATGACTCACCAACAGAAACTTTTCGTTTTAAAGAAATCCTAACTAAGCATGGCTATGA
CGTACTTGAAGCATCTAACGGTGCAGATGGTGTGACTTTGGCAAAAGCTGAGCAGCCTGACTTGGTATTAATGGATGTGG
TCATGCCAGGTGTAAATGGTTTTCAGGCAACGCGCCAGATTACCCGTGATGAAGACACGAAGCATATTCCAGTGGTGATT
GTGAGTACTAAAGATCAGGCAACTGACCGAGTATGGGGTAAACGTCAAGGCGCAATCGATTACTTAATCAAGCCAATCGA
AGAAAAGCAATTAATTGATGTAATTAAACAATTTCTAAATTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

39.496

99.167

0.392