Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimT   Type   Machinery gene
Locus tag   RKQ56_RS03195 Genome accession   NZ_CP134583
Coordinates   653426..653941 (-) Length   171 a.a.
NCBI ID   WP_000477147.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain XH1032     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 648426..658941
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RKQ56_RS03170 (RKQ56_03170) - 648972..650615 (+) 1644 WP_002061398.1 nitrite/sulfite reductase -
  RKQ56_RS03175 (RKQ56_03175) - 650608..651093 (+) 486 WP_000935252.1 DUF934 domain-containing protein -
  RKQ56_RS03180 (RKQ56_03180) - 651175..651528 (+) 354 WP_000457783.1 multidrug efflux SMR transporter -
  RKQ56_RS03185 (RKQ56_03185) - 651571..652014 (-) 444 WP_001176580.1 VOC family protein -
  RKQ56_RS03190 (RKQ56_03190) - 652142..653317 (-) 1176 WP_016686090.1 thiolase family protein -
  RKQ56_RS03195 (RKQ56_03195) fimT 653426..653941 (-) 516 WP_000477147.1 GspH/FimT family pseudopilin Machinery gene
  RKQ56_RS03200 (RKQ56_03200) omp38 654323..655393 (+) 1071 WP_000777878.1 outer membrane protein Omp38 -
  RKQ56_RS03205 (RKQ56_03205) - 655518..655661 (-) 144 WP_162138624.1 hypothetical protein -
  RKQ56_RS03210 (RKQ56_03210) - 655680..656885 (-) 1206 WP_032030771.1 RtcB family protein -
  RKQ56_RS03215 (RKQ56_03215) - 657163..658623 (-) 1461 WP_000004974.1 amino acid permease -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19587.81 Da        Isoelectric Point: 8.4960

>NTDB_id=806003 RKQ56_RS03195 WP_000477147.1 653426..653941(-) (fimT) [Acinetobacter baumannii strain XH1032]
MFKSPGFTIVELTITLVILVIMSVIAIPLYHQFMASVELKNTPRILTIHIQKAKYDAIIRHKNVVLCPSSDQLVCNTNWD
NRVISFVDNNHNLQHDLNEELLTSIDLNHHYGSMKLQRFGKKQNSIIFQGSSGLPIESNGSFIYCSYDQLKNFKLILSKM
GHVRLEELKNC

Nucleotide


Download         Length: 516 bp        

>NTDB_id=806003 RKQ56_RS03195 WP_000477147.1 653426..653941(-) (fimT) [Acinetobacter baumannii strain XH1032]
ATGTTTAAATCTCCTGGTTTTACTATAGTTGAGCTCACTATAACACTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAACTAAAAAATACGCCGCGTATACTCACAATTCATATACAAAAAGCCA
AATATGACGCAATTATTAGGCATAAGAATGTTGTTCTTTGCCCAAGTTCTGATCAATTGGTCTGCAATACGAATTGGGAT
AACCGCGTAATCAGCTTTGTAGATAATAACCATAATCTACAGCATGATTTAAATGAAGAGTTATTAACCTCTATAGATCT
TAACCATCACTACGGTTCTATGAAATTACAACGTTTTGGAAAAAAACAAAATAGTATTATTTTTCAAGGTAGTTCTGGAC
TACCCATCGAGTCGAATGGCAGTTTTATCTATTGTTCTTATGACCAGCTTAAAAACTTTAAATTAATTCTTAGCAAAATG
GGCCATGTGCGCTTAGAAGAGCTTAAAAATTGTTAG

Domains

Predicted by InterProScan.

Type II transport protein GspH (GspH)

(50-149)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimT Acinetobacter baylyi ADP1

43.373

97.076

0.421