Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   P3T66_RS09270 Genome accession   NZ_CP120512
Coordinates   1808579..1809268 (+) Length   229 a.a.
NCBI ID   WP_277576102.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain PMC104     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1803579..1814268
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3T66_RS09250 (P3T66_09250) - 1804021..1804572 (+) 552 WP_277576101.1 cysteine hydrolase family protein -
  P3T66_RS09255 (P3T66_09255) fusA 1805142..1807229 (-) 2088 WP_016265721.1 elongation factor G -
  P3T66_RS09260 (P3T66_09260) rpsG 1807325..1807795 (-) 471 WP_004270185.1 30S ribosomal protein S7 -
  P3T66_RS09265 (P3T66_09265) rpsL 1807885..1808298 (-) 414 WP_004270179.1 30S ribosomal protein S12 -
  P3T66_RS09270 (P3T66_09270) comC 1808579..1809268 (+) 690 WP_277576102.1 prepilin peptidase Machinery gene
  P3T66_RS09275 (P3T66_09275) - 1809272..1809844 (-) 573 WP_061827365.1 isochorismatase family protein -
  P3T66_RS09280 (P3T66_09280) rpoC 1810018..1813662 (-) 3645 WP_035147345.1 DNA-directed RNA polymerase subunit beta' -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26222.56 Da        Isoelectric Point: 7.2085

>NTDB_id=806001 P3T66_RS09270 WP_277576102.1 1808579..1809268(+) (comC) [Latilactobacillus sakei strain PMC104]
MLLYLIIFYSGACCASFLTVCAWRLPIEKSIITPRSHCDCCQQPLAWHDLLPLFSYLYLHGHCRTCHAQIKPTFLFSELI
GGLLACFIFSESLSWDLAYLLVILFYISLVDLFYYILYPIPLFASLMPLFYLYWPQNHWLGATIFCCGLLLTTYWASGFG
FGDVELLTILTLWVGLEPVLRILLAACLICILFQGIKKIWPSPKQATRQIPFIPYISMGVVILLLQTPQ

Nucleotide


Download         Length: 690 bp        

>NTDB_id=806001 P3T66_RS09270 WP_277576102.1 1808579..1809268(+) (comC) [Latilactobacillus sakei strain PMC104]
ATGTTACTTTATTTAATCATCTTTTATAGCGGTGCTTGTTGCGCCTCATTTCTAACCGTTTGCGCCTGGCGCTTACCCAT
CGAAAAGTCCATTATCACACCACGTTCGCACTGCGATTGCTGTCAGCAACCACTGGCTTGGCATGATTTATTACCACTAT
TCAGCTACCTATACTTACATGGCCACTGCCGCACTTGTCATGCTCAGATTAAGCCCACTTTTTTATTCAGCGAACTAATT
GGTGGTCTATTGGCCTGCTTCATTTTTAGCGAATCCCTTTCTTGGGACCTCGCTTATTTACTCGTGATTCTTTTTTACAT
CAGTCTCGTTGACCTCTTCTACTATATTCTCTATCCAATCCCCTTATTCGCATCACTGATGCCCCTCTTTTATTTGTATT
GGCCACAGAATCATTGGCTAGGAGCCACCATCTTTTGCTGCGGGCTGTTGCTCACCACTTACTGGGCGTCTGGTTTTGGC
TTTGGCGATGTCGAGTTACTCACTATCCTAACGTTGTGGGTGGGCCTTGAACCCGTTTTGCGAATTCTCTTGGCGGCCTG
TCTAATTTGCATTCTATTTCAAGGCATCAAAAAAATCTGGCCATCGCCTAAACAAGCGACGCGCCAGATTCCGTTTATCC
CCTATATATCGATGGGTGTGGTAATTCTACTTCTACAAACACCGCAGTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(11-89)

Type IV leader peptidase family (Peptidase_A24)

(99-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Latilactobacillus sakei subsp. sakei 23K

96.943

100

0.969