Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   P3T66_RS06890 Genome accession   NZ_CP120512
Coordinates   1346009..1346461 (-) Length   150 a.a.
NCBI ID   WP_105300046.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain PMC104     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1341009..1351461
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3T66_RS06850 (P3T66_06850) - 1341156..1341521 (+) 366 WP_011374991.1 DUF805 domain-containing protein -
  P3T66_RS06860 (P3T66_06860) - 1342064..1342522 (-) 459 WP_025016390.1 hypothetical protein -
  P3T66_RS06865 (P3T66_06865) - 1342577..1343773 (-) 1197 WP_251925651.1 acetate/propionate family kinase -
  P3T66_RS06870 (P3T66_06870) - 1343795..1344805 (-) 1011 WP_025016388.1 class I SAM-dependent methyltransferase -
  P3T66_RS06875 (P3T66_06875) - 1344929..1345267 (-) 339 WP_035145011.1 hypothetical protein -
  P3T66_RS06880 (P3T66_06880) comGF 1345230..1345742 (-) 513 WP_035145013.1 competence type IV pilus minor pilin ComGF Machinery gene
  P3T66_RS06885 (P3T66_06885) comGE 1345717..1346022 (-) 306 WP_016265375.1 hypothetical protein Machinery gene
  P3T66_RS06890 (P3T66_06890) comGD 1346009..1346461 (-) 453 WP_105300046.1 competence type IV pilus minor pilin ComGD Machinery gene
  P3T66_RS06895 (P3T66_06895) comGC 1346433..1346732 (-) 300 WP_025016383.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  P3T66_RS06900 (P3T66_06900) comGB 1346729..1347736 (-) 1008 WP_112234087.1 type II secretion system F family protein Machinery gene
  P3T66_RS06905 (P3T66_06905) comGA 1347729..1348619 (-) 891 WP_025016380.1 competence type IV pilus ATPase ComGA Machinery gene
  P3T66_RS06910 (P3T66_06910) - 1348736..1349467 (-) 732 WP_011375002.1 YebC/PmpR family DNA-binding transcriptional regulator -
  P3T66_RS06915 (P3T66_06915) - 1349558..1350058 (-) 501 WP_016265379.1 VanZ family protein -
  P3T66_RS06920 (P3T66_06920) - 1350155..1350529 (+) 375 WP_011375004.1 hypothetical protein -
  P3T66_RS06930 (P3T66_06930) - 1350716..1351330 (-) 615 WP_016265380.1 hypothetical protein -

Sequence

Protein


Download         Length: 150 a.a.        Molecular weight: 17460.35 Da        Isoelectric Point: 10.0999

>NTDB_id=805992 P3T66_RS06890 WP_105300046.1 1346009..1346461(-) (comGD) [Latilactobacillus sakei strain PMC104]
MIAARLSKNEGFTLIEMCVVLAIVSLLSWLPIYQIKQYRAQQAEQLFLHQFETSWDAARQYVAIEPRAVRVMWDAPTHTI
TFKGAGESFRNHQLVLPETLTVSNPAEWHLINITHNKGIKPRTLKLKSTLNNREYQYKVQMMWGVLHVQK

Nucleotide


Download         Length: 453 bp        

>NTDB_id=805992 P3T66_RS06890 WP_105300046.1 1346009..1346461(-) (comGD) [Latilactobacillus sakei strain PMC104]
TTGATAGCGGCACGGTTAAGCAAAAATGAGGGATTTACGTTGATTGAAATGTGCGTGGTCTTAGCAATTGTGAGTCTATT
AAGTTGGTTACCGATTTATCAAATTAAGCAATACCGTGCGCAACAGGCTGAGCAGTTGTTTCTACATCAATTTGAAACGA
GTTGGGATGCAGCTCGTCAATATGTGGCAATTGAACCGCGTGCCGTCCGTGTGATGTGGGATGCACCAACACATACGATC
ACATTTAAAGGTGCTGGTGAGTCATTTAGAAATCATCAACTCGTATTACCAGAAACTTTAACAGTGAGTAACCCAGCCGA
ATGGCATTTAATTAATATTACTCATAATAAGGGTATTAAACCGCGCACCTTAAAGTTAAAATCAACGCTTAATAATCGTG
AATATCAGTATAAAGTCCAGATGATGTGGGGGGTATTACATGTTCAGAAGTAG

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(7-28)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Latilactobacillus sakei subsp. sakei 23K

98.667

100

0.987