Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   P3R60_RS07695 Genome accession   NZ_CP120510
Coordinates   1481547..1482908 (+) Length   453 a.a.
NCBI ID   WP_316606809.1    Uniprot ID   -
Organism   Streptococcus pluranimalium strain SP21-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1476547..1487908
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3R60_RS07660 - 1476897..1477685 (-) 789 WP_316606139.1 formate/nitrite transporter family protein -
  P3R60_RS07665 - 1477766..1479007 (-) 1242 WP_316606140.1 NAD(P)H-dependent oxidoreductase -
  P3R60_RS07670 - 1479028..1479633 (-) 606 WP_104968532.1 NADPH-dependent FMN reductase -
  P3R60_RS07675 - 1479827..1480186 (+) 360 WP_316606141.1 YbaN family protein -
  P3R60_RS07680 - 1480288..1480623 (+) 336 WP_316606142.1 MarR family transcriptional regulator -
  P3R60_RS07685 - 1480622..1481011 (+) 390 Protein_1469 peptidase S41 -
  P3R60_RS07690 - 1481082..1481531 (+) 450 WP_316606143.1 dUTP diphosphatase -
  P3R60_RS07695 radA 1481547..1482908 (+) 1362 WP_316606809.1 DNA repair protein RadA Machinery gene
  P3R60_RS07700 - 1482968..1483693 (-) 726 WP_170237605.1 MerR family transcriptional regulator -
  P3R60_RS07705 rlmB 1483829..1484578 (+) 750 WP_316606144.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  P3R60_RS07710 - 1484598..1485113 (+) 516 WP_316606145.1 NYN domain-containing protein -
  P3R60_RS07715 - 1485228..1486088 (+) 861 WP_316606146.1 DegV family protein -
  P3R60_RS07720 rplM 1486262..1486708 (+) 447 WP_018380541.1 50S ribosomal protein L13 -
  P3R60_RS07725 rpsI 1486735..1487127 (+) 393 WP_017769585.1 30S ribosomal protein S9 -
  P3R60_RS07730 - 1487255..1487665 (-) 411 Protein_1478 tyrosine-type recombinase/integrase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49541.79 Da        Isoelectric Point: 6.5143

>NTDB_id=805865 P3R60_RS07695 WP_316606809.1 1481547..1482908(+) (radA) [Streptococcus pluranimalium strain SP21-2]
MAKKKSSFVCQECGYNSPKYLGRCPNCSAWSSFVEEVEVQEVKNARVSLTGEKTRPTKLKDVDSINYARTKTDMDEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLANRGTVLYVSGEESAEQIKLRSERLGDIDNEFYLYAETNMQNIRAEIE
KIKPDFLIIDSIQTIMSPEVSSVQGSVSQVREVTAELMNLAKTNNIATFIVGHVTKEGTLAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFEMQSGGLVQVLNPSQVFLEERLDGATGSAIVVTMEGSRPILAEVQALVTPTVFGNAK
RTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKEKTTNPQESFIGEIGLTGEIR
RVTRIEQRINEAAKLGFTKIYAPKNSLQGIDIPNNIQVIGVSTVGEVLKKVFA

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=805865 P3R60_RS07695 WP_316606809.1 1481547..1482908(+) (radA) [Streptococcus pluranimalium strain SP21-2]
ATCGCTAAGAAAAAATCGAGTTTTGTCTGTCAAGAGTGCGGTTATAATTCACCAAAATACTTAGGACGTTGTCCCAACTG
TTCGGCTTGGTCTTCCTTTGTCGAAGAAGTAGAGGTACAAGAGGTCAAAAATGCTCGCGTCAGTCTAACAGGTGAAAAAA
CACGCCCAACCAAGTTAAAAGATGTGGATTCTATCAACTATGCCCGTACTAAAACTGACATGGACGAATTTAACCGAGTT
TTAGGTGGGGGTGTTGTTCCAGGCAGTCTTGTCTTAATCGGTGGTGATCCTGGTATCGGAAAATCAACTTTACTCTTACA
AGTATCAACCCAACTTGCCAATCGTGGGACAGTGCTTTACGTGTCTGGGGAAGAATCAGCTGAGCAGATAAAACTCCGCA
GCGAGCGGCTAGGCGATATTGATAATGAGTTTTACCTTTATGCCGAGACCAACATGCAGAATATCCGAGCGGAGATTGAA
AAAATCAAGCCAGATTTTCTCATTATTGACTCTATTCAAACCATCATGAGCCCTGAGGTTTCAAGTGTGCAAGGTTCTGT
TTCTCAAGTTCGAGAGGTTACTGCAGAGCTGATGAATTTAGCTAAGACCAATAATATTGCCACCTTTATCGTTGGTCATG
TGACTAAGGAAGGAACTTTGGCTGGACCTCGTATGCTGGAACACATGGTAGATACGGTGCTTTATTTTGAAGGGGAACGC
CATCATACCTTCCGTATCCTTCGTGCCGTTAAAAACCGTTTTGGTTCAACTAATGAAATTGGGATTTTCGAGATGCAGTC
GGGTGGTTTGGTTCAAGTTTTAAATCCTAGCCAAGTCTTTTTAGAAGAGCGTTTAGATGGAGCGACAGGATCAGCTATTG
TCGTTACCATGGAAGGTTCTCGCCCTATTTTGGCGGAGGTTCAAGCTCTTGTGACGCCAACTGTTTTTGGAAATGCTAAA
CGTACGACCACAGGGCTAGACTTTAATCGGGTCAGCTTGATTATGGCGGTTCTTGAAAAACGATGTGGTTTGCTGCTGCA
GAATCAGGATGCCTACCTCAAGTCAGCGGGTGGCGTAAAACTGGATGAGCCAGCAATAGACCTTGCTGTCGCGGTAGCCA
TTGCTTCAAGTTACAAAGAAAAAACAACCAACCCACAAGAATCCTTTATCGGAGAAATTGGCTTAACAGGGGAAATTCGT
CGGGTCACTCGTATCGAACAACGTATTAATGAAGCTGCCAAGTTGGGCTTCACCAAAATCTACGCCCCTAAAAACTCTCT
TCAAGGCATTGATATTCCGAATAATATCCAAGTCATCGGTGTCTCAACCGTTGGAGAAGTTCTGAAAAAAGTGTTTGCTT
AA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)

AAA domain (AAA_25)

(68-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

88.742

100

0.887
  radA Streptococcus pneumoniae D39

88.742

100

0.887
  radA Streptococcus pneumoniae R6

88.742

100

0.887
  radA Streptococcus pneumoniae TIGR4

88.742

100

0.887
  radA Streptococcus mitis SK321

88.742

100

0.887
  radA Streptococcus mitis NCTC 12261

88.521

100

0.885
  radA Bacillus subtilis subsp. subtilis str. 168

61.369

100

0.614