Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   P3R60_RS06885 Genome accession   NZ_CP120510
Coordinates   1313022..1313738 (-) Length   238 a.a.
NCBI ID   WP_316606069.1    Uniprot ID   -
Organism   Streptococcus pluranimalium strain SP21-2     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1308022..1318738
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3R60_RS06860 dtd 1308455..1308898 (+) 444 WP_218653763.1 D-aminoacyl-tRNA deacylase -
  P3R60_RS06865 - 1308904..1309233 (+) 330 WP_218653762.1 hypothetical protein -
  P3R60_RS06870 - 1309238..1309882 (+) 645 WP_316606066.1 glutamate racemase -
  P3R60_RS06875 - 1310010..1311650 (-) 1641 WP_316606067.1 phosphoenolpyruvate carboxykinase (ATP) -
  P3R60_RS06880 - 1311830..1312987 (+) 1158 WP_316606068.1 glycerate kinase -
  P3R60_RS06885 treR 1313022..1313738 (-) 717 WP_316606069.1 trehalose operon repressor Regulator
  P3R60_RS06890 treP 1313939..1315927 (+) 1989 WP_316606070.1 PTS system trehalose-specific EIIBC component -
  P3R60_RS06895 treC 1316074..1317699 (+) 1626 WP_218653756.1 alpha,alpha-phosphotrehalase -
  P3R60_RS06900 - 1317878..1318615 (-) 738 WP_104968664.1 GntR family transcriptional regulator -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27348.32 Da        Isoelectric Point: 7.6031

>NTDB_id=805864 P3R60_RS06885 WP_316606069.1 1313022..1313738(-) (treR) [Streptococcus pluranimalium strain SP21-2]
MKKYEKVFRNLETAINQGIYQVNDYLPTEEELAKEYAVSRDTIRKALKLLAEHGLIQKRQGSGSQIIKHERINFPVSALT
SFQEITQAQGMATTTNVIAIDKLIVDGKMSELTGFPPKSHVWRITRQRVMEGVASVLDIDYLLTTFVPEIDRSIAEKSIY
DYLENHLHLMIDLAEKEITINQTNQQDSILLDLAGEHHVVSIKSKVFLTNGQQFQFTESRHKLDKFRFVDFAKRRPAN

Nucleotide


Download         Length: 717 bp        

>NTDB_id=805864 P3R60_RS06885 WP_316606069.1 1313022..1313738(-) (treR) [Streptococcus pluranimalium strain SP21-2]
ATGAAAAAGTATGAGAAAGTTTTCCGAAATTTAGAGACTGCTATTAACCAAGGGATCTACCAAGTTAACGACTATTTACC
AACCGAAGAAGAGTTGGCTAAAGAATATGCTGTCAGCCGAGATACCATTCGAAAAGCCTTAAAGCTCCTGGCAGAACACG
GACTTATTCAAAAACGTCAAGGTAGTGGCTCACAGATCATCAAGCATGAGCGCATTAACTTTCCTGTTTCAGCTCTTACC
AGCTTTCAGGAAATCACCCAAGCGCAAGGGATGGCAACGACAACTAATGTCATCGCTATCGACAAACTCATTGTTGATGG
GAAGATGTCAGAACTAACTGGTTTCCCACCAAAGAGTCATGTCTGGCGTATCACGCGCCAACGCGTGATGGAAGGGGTAG
CATCTGTCCTTGATATTGACTACTTGTTGACAACTTTTGTTCCTGAAATCGATCGTTCCATTGCGGAGAAATCCATTTAT
GATTATTTGGAAAACCACCTGCACCTCATGATTGATCTAGCTGAAAAAGAAATCACCATCAACCAGACCAATCAGCAAGA
CAGTATTCTTCTGGACTTAGCAGGTGAGCATCATGTTGTTTCCATTAAGTCCAAAGTCTTTCTCACCAATGGTCAACAAT
TTCAATTCACCGAAAGCCGGCACAAATTGGATAAATTTAGATTTGTAGATTTTGCTAAGAGAAGACCTGCAAATTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-65)

UTRA domain (UTRA)

(88-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

64.957

98.319

0.639