Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   P3R60_RS02855 Genome accession   NZ_CP120510
Coordinates   583477..585273 (-) Length   598 a.a.
NCBI ID   WP_316606603.1    Uniprot ID   -
Organism   Streptococcus pluranimalium strain SP21-2     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 578477..590273
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3R60_RS02830 - 578845..579552 (-) 708 WP_316606599.1 O-methyltransferase -
  P3R60_RS02835 - 580349..581560 (-) 1212 WP_316606600.1 OFA family MFS transporter -
  P3R60_RS02840 - 581654..582283 (-) 630 WP_316606601.1 HAD-IA family hydrolase -
  P3R60_RS02845 - 582276..582824 (-) 549 WP_316606602.1 GNAT family N-acetyltransferase -
  P3R60_RS02850 - 583027..583449 (-) 423 WP_218654149.1 hypothetical protein -
  P3R60_RS02855 pepF 583477..585273 (-) 1797 WP_316606603.1 oligoendopeptidase F Regulator
  P3R60_RS02860 - 585270..586232 (-) 963 WP_278025071.1 competence protein CoiA -
  P3R60_RS02865 - 586293..587006 (-) 714 WP_278025070.1 pseudouridine synthase -
  P3R60_RS02870 - 587110..588066 (+) 957 WP_278025069.1 glutathione S-transferase family protein -
  P3R60_RS02875 - 588113..588817 (-) 705 WP_316606604.1 glucosamine-6-phosphate deaminase -
  P3R60_RS02880 queA 588987..590033 (+) 1047 WP_316606605.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -

Sequence

Protein


Download         Length: 598 a.a.        Molecular weight: 68588.22 Da        Isoelectric Point: 4.4627

>NTDB_id=805840 P3R60_RS02855 WP_316606603.1 583477..585273(-) (pepF) [Streptococcus pluranimalium strain SP21-2]
MTDNRSHLKEEETWDLSTIFETDQAWEVERQALENDLKASQNDAGHLLDSAKSLLDITENALALMRRLETLYVYASMKND
QDTTIAVYQEMEAKATALSSLYSQTFAFYEPEFLAITKEQLENYKGEEPGLLAYGHYFEKLLAAKDHVLSQEAEELLAGA
SEIFGSAAETFSIFDNADVTYPWVTNDEGELVELTHGNFISLMESKNREVRKGAYEAYYGVYEQFQHTYAKTLQTNVKVH
NYKAKVRGYESARQAALSANFIPESAYDTLLAVVNKHLPLLHRYMKLRQELLGLDDLKMYDVYTPLSEHDMAITYLEALE
KSRQVLTVFGKDYSDRVDRAFSERWIDVHVNKGKRSGAYSGGSYDTNAFMLLNWQDTLDNLYTLIHETGHSLHSTFTREN
QPYVYGDYSIFLAEIASTTNENILTETLLEEVTDDKERFAILNHYLDGFKGTIFRQTQFAEFELAIHQADQAGQVLTSDF
LNKTYADLNEKYYGLSAEDNHEIQFEWARIPHFYYNFYVYQYATGFAAASYLADRIVHGTDKDRDNYLDYLKAGNSDYPL
NVIAKAGVDMTSADYLEGAFKVFEERLEELENLVAKLS

Nucleotide


Download         Length: 1797 bp        

>NTDB_id=805840 P3R60_RS02855 WP_316606603.1 583477..585273(-) (pepF) [Streptococcus pluranimalium strain SP21-2]
ATGACAGATAACCGTAGCCATCTGAAGGAAGAAGAAACTTGGGATTTAAGCACTATTTTTGAGACAGATCAAGCTTGGGA
AGTGGAACGTCAAGCCTTAGAAAACGATTTGAAAGCTTCTCAAAATGATGCGGGGCACCTTTTGGATTCAGCTAAAAGCT
TATTGGATATTACGGAAAATGCTTTAGCTTTGATGCGTCGTTTAGAGACATTATACGTCTATGCTTCCATGAAAAATGAC
CAGGATACGACAATCGCAGTTTATCAAGAGATGGAAGCCAAGGCGACGGCCTTATCATCTCTTTATAGTCAGACCTTTGC
CTTTTATGAGCCAGAATTTTTGGCTATCACTAAAGAACAGTTGGAAAACTATAAAGGTGAAGAGCCGGGCCTTCTTGCTT
ATGGCCATTATTTTGAAAAATTGTTGGCAGCTAAAGACCATGTATTGTCCCAAGAAGCAGAAGAATTACTAGCTGGTGCC
TCTGAAATTTTTGGCTCAGCAGCTGAAACCTTCTCCATTTTTGATAATGCTGATGTCACCTATCCTTGGGTAACCAATGA
TGAAGGAGAATTGGTCGAATTAACCCATGGTAACTTTATCAGCCTTATGGAATCTAAAAATCGTGAGGTTCGTAAGGGTG
CCTATGAAGCCTATTATGGTGTTTATGAGCAGTTTCAGCATACTTATGCTAAAACCCTTCAAACCAACGTTAAGGTACAT
AATTACAAGGCTAAAGTGCGTGGCTATGAGTCTGCTCGCCAAGCTGCTCTTTCAGCAAACTTTATTCCTGAGTCTGCCTA
TGACACTTTGTTAGCTGTTGTCAATAAGCATTTACCGCTTCTTCATCGCTATATGAAACTTCGTCAGGAGCTATTAGGAC
TGGATGACCTCAAAATGTACGATGTCTATACGCCACTGTCAGAGCATGATATGGCGATTACTTATCTGGAAGCTCTTGAA
AAGTCACGTCAAGTGTTAACGGTATTTGGTAAAGATTATAGCGACCGCGTTGACCGTGCTTTCTCAGAGCGTTGGATTGA
TGTACATGTTAATAAAGGGAAACGTTCGGGTGCCTATTCAGGCGGTTCTTACGATACCAATGCTTTTATGTTGCTCAACT
GGCAAGATACTTTAGACAATCTTTATACCCTTATTCATGAAACAGGCCATAGTCTGCATTCGACCTTTACACGTGAGAAT
CAGCCTTATGTTTATGGGGATTACAGTATTTTCCTAGCTGAAATTGCCTCAACGACTAATGAAAATATTTTGACCGAAAC
CCTCTTAGAAGAAGTGACTGATGATAAAGAACGTTTTGCTATCCTTAATCATTATTTGGATGGCTTTAAAGGAACAATCT
TCCGTCAAACACAATTCGCTGAGTTTGAATTAGCTATCCACCAAGCTGATCAAGCAGGGCAAGTCTTGACTAGCGATTTC
CTCAATAAGACTTATGCTGATTTGAATGAGAAGTATTACGGTTTGTCAGCTGAGGACAATCATGAGATTCAGTTTGAATG
GGCCCGTATCCCACATTTCTACTATAATTTCTACGTTTATCAATACGCGACAGGGTTTGCGGCTGCTTCTTATCTAGCAG
ATCGTATTGTTCATGGAACAGACAAAGACCGTGATAACTACTTAGACTATCTCAAAGCTGGTAATTCAGACTATCCACTT
AATGTCATTGCCAAAGCAGGTGTTGATATGACTAGTGCTGATTACCTTGAAGGGGCCTTCAAAGTCTTTGAAGAACGCTT
GGAAGAATTGGAAAACTTAGTCGCAAAACTAAGTTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(202-580)

Oligopeptidase F (Peptidase_M3_N)

(112-180)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

71.98

99.666

0.717