Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   P2869_RS01365 Genome accession   NZ_CP120508
Coordinates   302465..303808 (-) Length   447 a.a.
NCBI ID   WP_277597248.1    Uniprot ID   -
Organism   Paraburkholderia sp. SUR17     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 297465..308808
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P2869_RS01345 (P2869_01345) leuA 297664..299361 (-) 1698 WP_277597245.1 2-isopropylmalate synthase -
  P2869_RS01350 (P2869_01350) ybiB 299716..300711 (-) 996 WP_277597246.1 DNA-binding protein YbiB -
  P2869_RS01355 (P2869_01355) - 300977..301675 (+) 699 WP_026121010.1 fumarylacetoacetate hydrolase family protein -
  P2869_RS01360 (P2869_01360) maiA 301703..302347 (+) 645 WP_277597247.1 maleylacetoacetate isomerase -
  P2869_RS01365 (P2869_01365) pilA 302465..303808 (-) 1344 WP_277597248.1 signal recognition particle-docking protein FtsY Machinery gene
  P2869_RS01370 (P2869_01370) rsmD 304055..304684 (+) 630 WP_126877671.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  P2869_RS01375 (P2869_01375) coaD 304795..305304 (+) 510 WP_199541745.1 pantetheine-phosphate adenylyltransferase -
  P2869_RS01380 (P2869_01380) - 305461..305718 (+) 258 WP_017772637.1 YfhL family 4Fe-4S dicluster ferredoxin -
  P2869_RS01385 (P2869_01385) hisC 305751..306821 (-) 1071 WP_277597249.1 histidinol-phosphate transaminase -
  P2869_RS01390 (P2869_01390) pth 306841..307440 (-) 600 WP_017772639.1 aminoacyl-tRNA hydrolase -
  P2869_RS01395 (P2869_01395) - 307579..308199 (-) 621 WP_017772640.1 50S ribosomal protein L25/general stress protein Ctc -

Sequence

Protein


Download         Length: 447 a.a.        Molecular weight: 46779.46 Da        Isoelectric Point: 4.9962

>NTDB_id=805820 P2869_RS01365 WP_277597248.1 302465..303808(-) (pilA) [Paraburkholderia sp. SUR17]
MFSFFKRFRGSKAAEGTPVDAQADISAEVQSEPAQQPADVAETRPPQETAARVTPAAAPAPVPSARQPEAAPPQQRPAVD
IPAPAPTPAPPAVTPPTVAAPPVAMPAPAPTQAAAQQATASAAQSSQADDESVETVEIVPPPAPEPEAKKSWLSRLRSGL
SKTSSNIAGIFVATKIDEALYEELETALLMSDAGVEATEFLLESLREKVRTGRLTDAQQVKTALRGLLVDLLKPLEKSLV
LGRAQPLVMMIAGVNGAGKTTSIGKLAKHLQHFDQSVLLAAGDTFRAAAREQLAIWGERNNVTVVAQESGDPAAVIFDAV
GAARARKIDVLMADTAGRLPTQLHLMEELRKVKRVIGKALDGAPHEVLLVIDANTGQNALAQVKAFDDALGLTGLIVTKL
DGTAKGGILAAIARQRPVPVYFIGVGEKVEDLQPFSAEEFADALLGA

Nucleotide


Download         Length: 1344 bp        

>NTDB_id=805820 P2869_RS01365 WP_277597248.1 302465..303808(-) (pilA) [Paraburkholderia sp. SUR17]
ATGTTCAGTTTTTTCAAGCGATTCAGAGGATCGAAAGCCGCCGAAGGCACGCCCGTCGACGCGCAAGCTGATATCTCGGC
CGAGGTTCAAAGCGAACCCGCGCAACAGCCCGCCGACGTCGCGGAAACCAGACCGCCGCAGGAGACAGCCGCTCGCGTCA
CGCCAGCCGCGGCACCGGCACCGGTTCCGTCCGCGCGCCAGCCTGAAGCTGCGCCGCCTCAACAGCGGCCCGCCGTCGAC
ATCCCGGCGCCGGCGCCCACGCCCGCACCACCAGCCGTCACGCCGCCGACCGTAGCAGCACCGCCGGTCGCGATGCCTGC
GCCCGCCCCGACCCAAGCCGCCGCACAACAGGCCACCGCCAGCGCTGCCCAAAGCAGCCAGGCCGACGACGAATCCGTCG
AAACAGTCGAAATCGTTCCGCCGCCCGCACCGGAACCCGAAGCGAAGAAGTCGTGGCTCTCGCGGCTTAGAAGCGGCCTC
TCCAAAACCAGCTCGAACATTGCGGGCATCTTCGTCGCCACCAAGATCGACGAAGCGCTGTATGAAGAACTGGAGACCGC
GCTGCTGATGTCCGATGCAGGGGTGGAAGCCACGGAGTTCCTGCTCGAATCGCTGCGCGAGAAAGTCCGCACGGGCAGGC
TCACCGACGCACAGCAGGTGAAAACCGCATTGCGCGGCCTGCTCGTGGATCTGCTGAAGCCGCTCGAGAAATCGCTCGTG
CTCGGCCGCGCGCAGCCGCTCGTCATGATGATCGCGGGTGTGAACGGTGCGGGCAAAACCACGAGCATCGGCAAGCTCGC
CAAGCATCTGCAGCACTTCGATCAGTCAGTGCTGCTCGCGGCCGGCGACACGTTCCGCGCCGCCGCGCGCGAGCAACTCG
CCATCTGGGGCGAGCGCAACAACGTGACGGTGGTCGCGCAGGAAAGCGGCGACCCTGCCGCCGTGATCTTCGACGCGGTG
GGCGCCGCGCGCGCGCGCAAGATCGACGTGCTGATGGCCGACACGGCCGGCCGCCTGCCCACCCAGCTCCATCTGATGGA
AGAGTTGCGCAAGGTGAAGCGCGTGATCGGCAAGGCGCTCGACGGCGCGCCGCACGAAGTGCTGCTCGTGATCGACGCGA
ACACGGGTCAGAACGCGCTCGCCCAGGTGAAAGCATTCGACGACGCGCTCGGCCTCACCGGCCTCATCGTCACGAAACTC
GACGGCACGGCGAAGGGCGGCATCCTCGCTGCCATCGCGCGGCAGCGGCCGGTGCCGGTGTACTTCATCGGCGTGGGCGA
AAAGGTGGAAGACCTGCAGCCGTTCAGCGCCGAGGAATTTGCCGACGCGCTACTGGGCGCGTAG

Domains

Predicted by InterproScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(169-225)

SRP54-type protein, GTPase domain (SRP54)

(247-446)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

49.556

100

0.499