Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   P3G65_RS10630 Genome accession   NZ_CP120417
Coordinates   2043439..2044482 (-) Length   347 a.a.
NCBI ID   WP_019291940.1    Uniprot ID   -
Organism   Lactococcus sp. bn62     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 2038439..2049482
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3G65_RS10615 (P3G65_10610) rpsB 2038473..2039246 (-) 774 WP_003133158.1 30S ribosomal protein S2 -
  P3G65_RS10620 (P3G65_10615) - 2039519..2040559 (+) 1041 WP_019291938.1 lactonase family protein -
  P3G65_RS10625 (P3G65_10620) adhE 2040714..2043407 (+) 2694 WP_284071199.1 bifunctional acetaldehyde-CoA/alcohol dehydrogenase -
  P3G65_RS10630 (P3G65_10625) sepM 2043439..2044482 (-) 1044 WP_019291940.1 SepM family pheromone-processing serine protease Regulator
  P3G65_RS10635 (P3G65_10630) coaD 2044472..2044969 (-) 498 WP_019291941.1 pantetheine-phosphate adenylyltransferase -
  P3G65_RS10640 (P3G65_10635) rsmD 2044959..2045498 (-) 540 WP_019293304.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  P3G65_RS10645 (P3G65_10640) - 2045597..2046943 (-) 1347 WP_003133148.1 glucose-6-phosphate isomerase -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37744.08 Da        Isoelectric Point: 7.9913

>NTDB_id=805575 P3G65_RS10630 WP_019291940.1 2043439..2044482(-) (sepM) [Lactococcus sp. bn62]
MKNEKIKKHKKLKLFFAIALPLLIVVGLFFPLPYYIEQPGGTIPVNQMVDVAGKKDEHKGNFYLTTVEMVRANAASMLYS
KSNSFATVVSSEEMTGGMTNQQFDLVNQFYMQTAQNTAIYQAFKLAGKPYEMKYQGVYVLSITEDSTFKNALQLSDTITA
VNGHTFKSSTEMIDYVSQQKVGDSVTIKYTRVDGSNHEATGKYIKLSNGKTGIGIGLVDHTQVVTDPKVKIDAGSIGGPS
AGMMFTLEIYSQITGKDLRQGREIAGTGTINEDGSIGQIGGVDKKVATASNAGAKIFLCPDETEEQTKASGTTNNYTDAL
AAAKKLNTDMKIVPVKTIQDALDYLEK

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=805575 P3G65_RS10630 WP_019291940.1 2043439..2044482(-) (sepM) [Lactococcus sp. bn62]
ATGAAAAATGAAAAAATAAAAAAGCATAAAAAACTAAAGCTATTCTTTGCCATCGCGCTACCGCTTCTTATTGTAGTGGG
TTTATTCTTCCCCTTACCTTACTATATCGAGCAGCCAGGAGGAACCATTCCAGTTAACCAAATGGTTGATGTTGCAGGGA
AAAAAGACGAACATAAAGGCAACTTTTATTTAACGACAGTTGAAATGGTTCGCGCCAATGCAGCAAGTATGCTTTATTCC
AAGTCGAACTCTTTTGCCACTGTTGTGAGTAGTGAAGAGATGACGGGTGGAATGACCAATCAGCAATTTGACTTGGTCAA
CCAGTTTTATATGCAGACAGCGCAAAACACGGCTATTTATCAGGCCTTTAAGTTGGCAGGGAAACCTTATGAGATGAAGT
ATCAAGGTGTTTATGTTTTGAGCATCACTGAGGATTCAACCTTTAAAAATGCCTTACAACTTTCAGATACGATAACGGCA
GTTAATGGACATACTTTCAAATCTTCAACTGAGATGATTGATTATGTATCGCAACAAAAAGTTGGGGATAGCGTTACCAT
CAAATATACACGTGTGGATGGCAGTAATCATGAAGCCACAGGTAAGTACATTAAGTTGAGTAATGGTAAAACAGGGATTG
GTATTGGTTTAGTAGATCATACCCAGGTTGTGACAGACCCTAAAGTTAAAATCGATGCTGGAAGTATTGGCGGGCCAAGT
GCTGGTATGATGTTTACCTTGGAAATATATAGCCAAATTACAGGCAAAGATTTACGTCAAGGACGCGAAATTGCAGGTAC
TGGAACGATCAATGAGGATGGCAGCATCGGGCAAATAGGTGGCGTTGATAAAAAAGTTGCTACAGCAAGTAATGCGGGCG
CAAAAATTTTCCTTTGCCCAGATGAAACGGAAGAACAGACAAAGGCTTCTGGTACAACAAATAACTACACAGATGCACTT
GCGGCAGCTAAAAAGTTGAATACAGATATGAAAATTGTACCTGTAAAGACAATTCAAGATGCGCTAGATTATCTCGAAAA
ATAA

Domains

Predicted by InterproScan.

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(230-308)

PDZ domain (PDZ_2)

(134-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

48.991

100

0.49