Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   RKQ62_RS05160 Genome accession   NZ_CP134566
Coordinates   1074010..1074951 (+) Length   313 a.a.
NCBI ID   WP_001210791.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain XH1038     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1069010..1079951
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RKQ62_RS05150 (RKQ62_05180) basA 1069433..1071280 (+) 1848 WP_000910254.1 acinetobactin non-ribosomal peptide synthetase subunit BasA -
  RKQ62_RS05155 (RKQ62_05185) basB 1071351..1073378 (-) 2028 WP_000939844.1 acinetobactin non-ribosomal peptide synthetase subunit BasB -
  RKQ62_RS05160 (RKQ62_05190) ceuB 1074010..1074951 (+) 942 WP_001210791.1 ferric acinetobactin ABC transporter permease subunit BauD Machinery gene
  RKQ62_RS05165 (RKQ62_05195) bauC 1074951..1075898 (+) 948 WP_001223279.1 ferric acinetobactin ABC transporter permease subunit BauC -
  RKQ62_RS05170 (RKQ62_05200) bauE 1075895..1076665 (+) 771 WP_000582123.1 ferric acinetobactin ABC transporter ATP-binding protein BauE -
  RKQ62_RS05175 (RKQ62_05205) bauB 1076672..1077640 (+) 969 WP_001104131.1 siderophore-binding periplasmic lipoprotein BauB -

Sequence

Protein


Download         Length: 313 a.a.        Molecular weight: 34007.08 Da        Isoelectric Point: 8.6941

>NTDB_id=805567 RKQ62_RS05160 WP_001210791.1 1074010..1074951(+) (ceuB) [Acinetobacter baumannii strain XH1038]
MRFGLFCIFIILCICSLLLGAEQIQWSTLFSFSHESWLTLTASRIPRLITIVLTGIGLAVCGVILQHIVRNKFVEPETSG
GLDAAKLGILVSLTLVPVTSTLSKMIFAIIFCFIASLIYIAIIRRIRFRNTVLVPVIGLMYGSVLSALAEFYAYRFNILQ
SMQGWLLGDFSKIVQGHYEVIYIIFPIVVLTYLFAHRFTVIGMGEEMASSLGLSYAAIAAIGLILVAITVSTTVITVGAI
PFVGLVVPNLVALKYGENLAKTLPIVALGGASLLLICDILGRSIIYPFEVPIGLTAGGVGGIIFLILILREFR

Nucleotide


Download         Length: 942 bp        

>NTDB_id=805567 RKQ62_RS05160 WP_001210791.1 1074010..1074951(+) (ceuB) [Acinetobacter baumannii strain XH1038]
ATGCGATTTGGCTTATTCTGTATTTTTATCATTTTATGTATTTGCTCATTATTGCTCGGGGCTGAACAAATACAGTGGTC
TACCTTATTTTCTTTTTCTCATGAGAGTTGGCTCACTCTTACAGCCAGCCGTATTCCTCGTTTGATTACCATTGTACTCA
CCGGTATCGGTTTGGCGGTATGTGGTGTCATCTTGCAGCATATTGTGCGTAACAAGTTTGTTGAACCGGAAACATCGGGC
GGTTTAGATGCTGCCAAACTGGGAATTTTAGTGTCATTAACTTTAGTTCCGGTAACCAGCACGCTGAGCAAGATGATATT
TGCGATCATTTTTTGTTTTATTGCCAGCTTAATTTATATCGCAATTATTCGCCGGATCCGTTTTAGAAATACGGTTTTAG
TACCGGTTATTGGTTTGATGTACGGCAGTGTACTGAGTGCCTTAGCTGAGTTTTATGCCTATCGCTTTAATATTTTACAA
AGTATGCAAGGGTGGCTTTTAGGAGATTTTTCAAAAATTGTCCAAGGTCACTATGAAGTTATTTACATTATTTTTCCGAT
TGTTGTCCTGACTTATCTTTTCGCACATCGCTTTACCGTGATTGGTATGGGTGAAGAGATGGCTTCTAGCTTGGGACTCA
GTTATGCAGCTATAGCCGCCATTGGTTTAATACTGGTTGCTATTACAGTTTCGACCACAGTAATTACGGTTGGTGCTATT
CCTTTTGTCGGGCTCGTGGTCCCCAATTTGGTCGCACTGAAATACGGAGAAAACTTAGCTAAAACCTTGCCCATTGTGGC
TTTAGGTGGGGCGTCTCTATTACTGATTTGCGACATTCTTGGTCGCTCGATTATTTATCCATTTGAAGTGCCGATCGGAC
TTACCGCAGGTGGTGTGGGGGGAATTATTTTCCTCATCCTCATTTTGAGGGAGTTCAGATAA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(9-310)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

44.257

94.569

0.419