Detailed information NTG0805566

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: P3G65_RS08975
• Genome accession: NZ_CP120417
• Coordinates: 1723072..1725318 (-)
• Length: 748 a.a.
• NCBI ID: WP_107106237.1
• Uniprot ID: -
• Organism: Lactococcus sp. bn62
• Function: degradation of ComX (predicted from homology) Competence regulation

Genomic Context

Location: 1718072..1730318

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
P3G65_RS08950 (P3G65_08955)	fabZ	1718402..1718860 (+)	459	WP_003134189.1	3-hydroxyacyl-ACP dehydratase FabZ	-
P3G65_RS08955 (P3G65_08960)	uvrB	1718887..1720875 (-)	1989	WP_284071164.1	excinuclease ABC subunit UvrB	-
P3G65_RS08960 (P3G65_08965)	-	1720872..1721327 (-)	456	WP_017370530.1	RNA pyrophosphohydrolase	-
P3G65_RS08965 (P3G65_08970)	def	1721432..1722058 (+)	627	WP_017370260.1	peptide deformylase	-
P3G65_RS08970 (P3G65_08975)	yqeK	1722430..1723017 (-)	588	WP_019291614.1	bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK	-
P3G65_RS08975 (P3G65_08980)	clpC	1723072..1725318 (-)	2247	WP_107106237.1	ATP-dependent Clp protease ATP-binding subunit	Regulator
P3G65_RS08980 (P3G65_08985)	rpoD	1725536..1726918 (-)	1383	WP_017370526.1	RNA polymerase sigma factor RpoD	-
P3G65_RS08990 (P3G65_08990)	dnaG	1726954..1728840 (-)	1887	WP_017370525.1	DNA primase	-

Sequence

Protein

• Length: 748 a.a.
• Molecular weight: 83371.37 Da
• Isoelectric Point: 4.7434

>NTDB_id=805566 P3G65_RS08975 WP_107106237.1 1723072..1725318(-) (clpC) [Lactococcus sp. bn62]
MLCQNCKINEATIHLYTNVNGQRKQVDLCQNCYQIMKSGGQESLFAGATNISNNDDPFNPFPDIFQALHGNDQGRTMTPP
TQAGGRGPGGPQNPRGSQAPKGLLEEFGVNITDAARRGEIDPVIGRDSEITRVIEILNRRTKNNPVLIGEPGVGKTAVVE
GLAQKIVDGDVPQKLQNKEVIRLDVVSLVQGTGVRGQFEERMQKLMEEIRKRDDVILFIDEIHEIVGAGSAGEGNMDAGN
ILKPALARGELQLVGATTLNEYRIIEKDAALERRMQPVKVDEPSVDETITILRGIQKRYEDYHHVKYSDEAILAAANLSN
RYIQDRFLPDKAIDLLDEAGSKKNLTLKFVDPEDIKKRIEQAEAQKNEAMQREDFEKAAHFRDQIAKLRELQSHEISDTD
MPNITEKDIEVIVEEKTHIPVGDLKEKEQTQLINLAEDLKEHVIGQDEAIDKISKAVRRSRVGLGKPNRPIGSFLFVGPT
GVGKTELAKQLAYELFGSRDSMIRFDMSEYMEKHSVAKLIGAPPGYVGYEEAGQLTERVRRNPYSLILLDEIEKAHPDVM
HMFLQILDDGRLTDAQGRTVSFKDAIIIMTSNAGTGKVEASVGFGAAREGRTNSVLGELGNFFSPEFMNRFDAIIEFSAL
SKENLLKIVDLMLDEVNAQIAQNDIHLDVTQAVKEKLVDLGYDPKMGARPLRRTIQDNIEDAIADFYIEHPEYKELLADL
VDDKIVIVNKPEEVKGTADTSDTEDEEK

Nucleotide

• Length: 2247 bp

>NTDB_id=805566 P3G65_RS08975 WP_107106237.1 1723072..1725318(-) (clpC) [Lactococcus sp. bn62]
ATGCTCTGCCAAAATTGTAAAATAAACGAAGCGACAATTCACCTTTATACAAATGTGAATGGCCAGCGTAAGCAAGTGGA
TTTATGCCAAAACTGTTATCAAATTATGAAATCAGGTGGTCAAGAAAGCTTGTTTGCTGGAGCTACAAATATTTCGAATA
ATGATGATCCTTTTAATCCATTTCCAGATATTTTCCAAGCCTTACATGGTAATGATCAAGGTCGGACAATGACACCTCCA
ACACAAGCGGGTGGTCGAGGCCCAGGAGGTCCACAAAATCCTCGTGGAAGTCAAGCACCTAAAGGACTTCTTGAAGAATT
CGGAGTCAACATTACTGATGCTGCACGTCGTGGAGAAATAGATCCTGTTATTGGACGGGATTCTGAAATTACCCGTGTTA
TCGAAATTTTGAATCGTCGAACAAAAAATAATCCTGTTCTTATCGGTGAACCTGGTGTTGGGAAAACAGCAGTTGTTGAA
GGTTTAGCCCAAAAAATAGTTGATGGTGATGTACCACAAAAACTACAAAATAAAGAAGTTATTCGTCTTGATGTTGTCAG
TCTCGTCCAAGGTACTGGTGTGCGTGGGCAATTTGAAGAGCGTATGCAAAAACTGATGGAAGAGATTCGTAAACGTGATG
ACGTTATCCTCTTCATTGATGAAATTCATGAGATTGTGGGCGCAGGCTCTGCTGGGGAAGGAAATATGGATGCTGGAAAT
ATCCTTAAACCGGCTTTAGCACGTGGAGAACTCCAACTTGTTGGAGCAACAACCCTCAATGAATATCGAATTATTGAAAA
AGATGCAGCGCTTGAGCGTCGGATGCAACCTGTTAAAGTTGATGAACCTTCTGTAGATGAGACTATCACAATCTTACGTG
GTATTCAAAAACGTTATGAAGATTATCATCATGTAAAATACTCAGATGAAGCAATCTTAGCTGCTGCAAATCTGTCTAAC
CGTTATATTCAGGACCGTTTCCTTCCCGATAAAGCAATAGACTTGCTGGACGAAGCGGGTTCGAAAAAGAATCTGACCCT
CAAATTTGTTGATCCTGAGGACATAAAGAAACGTATTGAGCAAGCAGAGGCGCAAAAAAACGAAGCCATGCAACGTGAAG
ATTTTGAGAAAGCAGCTCATTTCCGTGATCAAATCGCTAAGCTTCGTGAGCTTCAAAGCCATGAAATCTCAGATACTGAC
ATGCCAAATATCACAGAAAAAGATATTGAAGTAATTGTTGAAGAAAAGACACATATACCTGTAGGTGATTTGAAAGAAAA
AGAACAAACACAGCTCATTAATCTAGCTGAAGACTTGAAAGAACATGTTATCGGGCAAGATGAAGCGATTGATAAAATTT
CTAAAGCTGTGCGTCGTTCGCGTGTCGGACTTGGAAAGCCTAATCGTCCTATCGGTTCATTCCTCTTTGTTGGACCTACT
GGTGTAGGGAAGACCGAACTTGCAAAACAATTGGCTTATGAGCTTTTTGGCTCAAGAGATAGCATGATTCGCTTTGACAT
GTCGGAATACATGGAAAAACATAGTGTGGCTAAGTTGATTGGTGCTCCTCCAGGATATGTGGGTTATGAAGAAGCAGGTC
AGTTGACAGAACGTGTGCGCCGTAACCCATACAGCTTAATTTTATTGGATGAGATTGAGAAAGCTCACCCGGATGTAATG
CATATGTTCTTGCAAATTCTTGATGACGGGCGTTTGACAGATGCGCAAGGTCGTACAGTTTCCTTCAAAGATGCTATCAT
CATTATGACATCGAATGCTGGTACAGGTAAGGTTGAAGCAAGTGTTGGTTTTGGCGCTGCACGTGAAGGACGTACGAATT
CAGTGCTTGGAGAGTTGGGTAATTTCTTCAGTCCAGAATTCATGAACCGTTTTGATGCTATCATTGAATTCTCAGCATTG
AGCAAAGAAAACTTGCTTAAGATTGTAGATTTAATGTTGGATGAAGTAAATGCTCAAATCGCTCAAAATGATATTCATCT
TGACGTCACACAGGCGGTTAAAGAAAAACTCGTTGATCTGGGCTACGATCCGAAAATGGGAGCACGCCCATTACGTCGTA
CCATCCAGGATAATATCGAGGATGCTATTGCTGATTTTTATATCGAGCATCCTGAGTATAAAGAATTACTTGCAGATTTG
GTTGATGATAAGATTGTTATTGTGAATAAGCCTGAAGAAGTAAAAGGCACAGCGGATACATCTGATACTGAAGATGAGGA
GAAATAA

Domains

Predicted by InterproScan.

• ATPase family associated with various cellular activities (AAA) (AAA) (146-259)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (640-710)

• AAA lid domain (AAA_lid_9) (284-383)

• AAA domain (Cdc48 subfamily) (AAA_2) (469-634)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Lactococcus lactis subsp. cremoris KW2	86.497	100	0.865
clpE	Streptococcus mutans UA159	77.748	100	0.785
clpE	Streptococcus pneumoniae TIGR4	77.702	97.727	0.759
clpE	Streptococcus pneumoniae Rx1	77.702	97.727	0.759
clpE	Streptococcus pneumoniae D39	77.702	97.727	0.759
clpE	Streptococcus pneumoniae R6	77.702	97.727	0.759
clpC	Bacillus subtilis subsp. subtilis str. 168	52.1	85.963	0.448
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	47.635	81.952	0.39
clpC	Streptococcus pneumoniae Rx1	46.935	82.888	0.389
clpC	Streptococcus pneumoniae D39	46.935	82.888	0.389
clpC	Streptococcus pneumoniae TIGR4	46.774	82.888	0.388
clpC	Streptococcus mutans UA159	46.44	82.62	0.384
clpC	Streptococcus thermophilus LMD-9	45.645	82.888	0.378
clpC	Streptococcus thermophilus LMG 18311	45.484	82.888	0.377