Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   P3G65_RS03485 Genome accession   NZ_CP120417
Coordinates   631743..633548 (+) Length   601 a.a.
NCBI ID   WP_019292045.1    Uniprot ID   A0AAJ2ISP0
Organism   Lactococcus sp. bn62     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 626743..638548
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3G65_RS03465 (P3G65_03470) - 626892..627716 (-) 825 WP_019292049.1 Cof-type HAD-IIB family hydrolase -
  P3G65_RS03470 (P3G65_03475) - 628081..629502 (+) 1422 WP_019292048.1 NCS2 family permease -
  P3G65_RS03475 (P3G65_03480) - 629579..630679 (+) 1101 WP_019292047.1 YdcF family protein -
  P3G65_RS03480 (P3G65_03485) coiA 630755..631759 (+) 1005 WP_284071329.1 competence protein CoiA Machinery gene
  P3G65_RS03485 (P3G65_03490) pepF 631743..633548 (+) 1806 WP_019292045.1 oligoendopeptidase F Regulator
  P3G65_RS03490 (P3G65_03495) - 633548..634231 (+) 684 WP_019292044.1 O-methyltransferase -
  P3G65_RS03495 (P3G65_03500) - 634329..635237 (+) 909 WP_019292043.1 peptidyl-prolyl cis-trans isomerase -
  P3G65_RS03500 (P3G65_03505) alaS 635487..638105 (+) 2619 WP_107106184.1 alanine--tRNA ligase -

Sequence

Protein


Download         Length: 601 a.a.        Molecular weight: 69719.25 Da        Isoelectric Point: 4.7851

>NTDB_id=805558 P3G65_RS03485 WP_019292045.1 631743..633548(+) (pepF) [Lactococcus sp. bn62]
MAKKRDEIAENLTWDLSTVFENDAAWELELKRVSERLGTVKHYEGHLLDSAQSLLEITEIELEISRAVEKVYVYASMKHD
QDTQVSRYQEYEAKATNLYAKLGETFAFYEPEFLALTPERYASFRREEPKLEQYSHMFDRLFAKKEHILSPKEEKLLASA
SEIFGAAAETFEIFDNADIELPMIKDEKGQEVQLTHGNYISLMESKERQVRKAAYQALYSNYEQYQHTYAKTLQTNVKVH
NFKAKMRGYHSARQAALSSNFIPEEVYDKLLESVNKYLHLLHRYIKLREQILGLENDLKMYDVYTPLSDLDYKFNYSEAV
EKAEEVLQIFGPEYANHVKKAFEERWIDVAENSGKRSGAYSGGCYDTNAFMLLNWQETLDDLFTLVHEMGHSMHSTFTRE
NQPYVYGDYPIFLAEIASTTNENILTESLLAESTDEKVRFAILYHWLDGFRGTVFRQSQFAEFEHEIHKADQEGKVLTSE
FMNQLYAGLNEKYYGLAAQENPEIQYEWARIPHFYYNFYVFQYATGFAAATYLAEAIVNGGPDAREKYLAYLKAGSSDYP
LAVIAQAGVDMEETTYLESAFAVFEKRLIELEKLVEKGAHL

Nucleotide


Download         Length: 1806 bp        

>NTDB_id=805558 P3G65_RS03485 WP_019292045.1 631743..633548(+) (pepF) [Lactococcus sp. bn62]
ATGGCAAAAAAACGTGATGAAATAGCTGAAAACTTAACTTGGGATTTGTCAACTGTGTTTGAAAACGATGCCGCCTGGGA
ACTAGAACTTAAAAGAGTTTCGGAAAGATTAGGGACGGTAAAGCACTACGAAGGACATCTTCTAGATAGCGCTCAAAGCT
TATTAGAAATCACGGAAATTGAGCTGGAAATCTCGCGTGCTGTGGAGAAGGTTTATGTCTATGCCTCAATGAAACATGAC
CAAGATACGCAAGTGAGTCGTTACCAAGAATACGAAGCCAAAGCCACAAATTTATATGCCAAGCTTGGAGAAACCTTTGC
TTTTTACGAGCCGGAATTCTTAGCTTTAACGCCAGAACGTTATGCAAGCTTTAGAAGAGAAGAACCCAAACTGGAGCAAT
ATTCTCATATGTTTGACCGCCTTTTTGCTAAAAAGGAGCATATCTTAAGTCCAAAAGAGGAAAAACTCTTAGCCAGTGCT
AGTGAGATTTTTGGTGCAGCCGCCGAAACTTTCGAAATTTTTGACAATGCTGATATTGAGCTTCCGATGATTAAAGATGA
AAAAGGGCAGGAAGTACAGCTGACACACGGTAATTATATCTCGCTCATGGAAAGTAAGGAACGTCAGGTGCGAAAGGCAG
CTTATCAAGCCCTTTATAGCAACTATGAACAGTATCAGCACACTTATGCTAAAACGCTACAAACAAATGTAAAAGTCCAT
AATTTTAAGGCGAAGATGCGTGGCTACCATTCAGCCCGTCAAGCAGCTTTATCAAGTAATTTTATTCCGGAAGAAGTTTA
CGATAAGCTTTTGGAGTCGGTTAATAAATATTTGCATCTTTTACATCGTTATATTAAATTGCGTGAGCAAATTTTAGGGT
TAGAGAACGATTTAAAGATGTATGATGTCTATACACCCTTATCGGACTTGGATTATAAGTTTAACTACTCCGAGGCAGTG
GAGAAAGCGGAAGAAGTTCTTCAAATTTTTGGACCTGAATATGCGAACCATGTTAAAAAAGCCTTTGAAGAGCGGTGGAT
TGATGTAGCTGAAAATAGCGGTAAACGTTCGGGTGCTTATTCAGGGGGATGCTATGATACAAATGCTTTTATGCTGTTAA
ACTGGCAAGAAACTTTGGATGATTTGTTCACCTTAGTACATGAAATGGGCCACAGTATGCATTCCACATTTACACGAGAA
AATCAACCTTATGTTTATGGGGACTATCCAATCTTTCTTGCAGAAATTGCTTCAACAACCAATGAGAATATCTTGACTGA
AAGTTTACTTGCGGAGTCGACAGATGAAAAAGTGCGATTTGCTATTTTATACCACTGGCTTGATGGTTTCCGTGGCACTG
TTTTCCGTCAAAGCCAATTTGCTGAATTTGAACATGAGATTCATAAAGCTGATCAAGAAGGAAAAGTTCTGACTAGCGAA
TTCATGAACCAGCTTTATGCGGGGCTGAATGAAAAATACTACGGTTTAGCTGCTCAGGAAAATCCTGAAATTCAATATGA
GTGGGCTCGCATTCCGCACTTCTATTATAATTTTTATGTCTTCCAATACGCAACAGGCTTTGCCGCAGCAACTTATCTTG
CTGAGGCTATCGTTAATGGTGGCCCAGATGCGCGTGAAAAATACCTCGCTTATCTCAAAGCAGGATCAAGTGATTATCCA
CTGGCTGTGATTGCTCAAGCAGGTGTGGATATGGAAGAAACAACATATTTAGAATCAGCATTTGCTGTTTTTGAAAAACG
TTTAATTGAGCTAGAAAAATTAGTCGAAAAAGGAGCCCATTTATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(112-180)

Peptidase family M3 (Peptidase_M3)

(202-582)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

64.393

100

0.644