Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimT   Type   Machinery gene
Locus tag   RKQ62_RS03030 Genome accession   NZ_CP134566
Coordinates   619446..619961 (-) Length   171 a.a.
NCBI ID   WP_000477153.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain XH1038     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 614446..624961
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RKQ62_RS03005 (RKQ62_03015) - 614994..616637 (+) 1644 WP_000281766.1 nitrite/sulfite reductase -
  RKQ62_RS03010 (RKQ62_03020) - 616630..617115 (+) 486 WP_002059488.1 DUF934 domain-containing protein -
  RKQ62_RS03015 (RKQ62_03025) - 617197..617550 (+) 354 WP_000457783.1 multidrug efflux SMR transporter -
  RKQ62_RS03020 (RKQ62_03030) - 617593..618036 (-) 444 WP_002059497.1 VOC family protein -
  RKQ62_RS03025 (RKQ62_03035) - 618159..619337 (-) 1179 WP_002059507.1 thiolase family protein -
  RKQ62_RS03030 (RKQ62_03040) fimT 619446..619961 (-) 516 WP_000477153.1 GspH/FimT family pseudopilin Machinery gene
  RKQ62_RS03035 (RKQ62_03045) omp38 620343..621413 (+) 1071 WP_002059502.1 outer membrane protein Omp38 -
  RKQ62_RS03040 (RKQ62_03050) - 621538..621681 (-) 144 WP_162138624.1 hypothetical protein -
  RKQ62_RS03045 (RKQ62_03055) - 621700..622905 (-) 1206 WP_017897618.1 RtcB family protein -
  RKQ62_RS03050 (RKQ62_03060) - 623182..624642 (-) 1461 WP_000004971.1 amino acid permease -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19605.87 Da        Isoelectric Point: 9.1498

>NTDB_id=805558 RKQ62_RS03030 WP_000477153.1 619446..619961(-) (fimT) [Acinetobacter baumannii strain XH1038]
MFKSPGFTIVELTITLVILVIMSVIAIPLYHQFMASVELKNTPRILTIHIQKAKYDAIIRHKNVVLCPSSNQLVCNTNWD
NRVISFVDNNRNLQHDLNEELLTSIDLNHHYGSMKLQRFGKKQNSIIFQGSSGLPIESNGSFIYCSYDQLKNFKLILSKM
GHVRLEELKNC

Nucleotide


Download         Length: 516 bp        

>NTDB_id=805558 RKQ62_RS03030 WP_000477153.1 619446..619961(-) (fimT) [Acinetobacter baumannii strain XH1038]
ATGTTTAAATCTCCTGGTTTTACTATAGTTGAGCTCACTATAACACTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAACTAAAAAATACGCCGCGCATACTCACAATTCATATACAAAAAGCCA
AATATGACGCAATTATTAGGCATAAGAATGTTGTTCTTTGTCCAAGTTCTAATCAATTGGTCTGCAATACGAATTGGGAT
AACCGCGTAATCAGCTTTGTAGATAATAACCGTAATCTACAGCATGATTTAAATGAAGAATTATTGACCTCTATAGATCT
TAACCATCACTACGGTTCTATGAAATTACAACGTTTTGGAAAAAAACAAAATAGTATTATTTTTCAAGGTAGTTCTGGAC
TACCCATCGAGTCGAATGGCAGTTTTATCTATTGTTCTTATGACCAGCTTAAAAACTTTAAATTAATTCTTAGCAAAATG
GGCCATGTGCGCTTAGAAGAACTTAAAAATTGTTAG

Domains

Predicted by InterProScan.

Type II transport protein GspH (GspH)

(50-149)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimT Acinetobacter baylyi ADP1

43.373

97.076

0.421