Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   OO829_RS07090 Genome accession   NZ_AP026114
Coordinates   1477431..1477907 (-) Length   158 a.a.
NCBI ID   WP_001186192.1    Uniprot ID   A0A0H3JIA8
Organism   Escherichia coli strain CEC01302     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1472431..1482907
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OO829_RS07040 (CEC01302_13630) sbmC 1472923..1473396 (+) 474 WP_001105393.1 DNA gyrase inhibitor SbmC -
  OO829_RS07045 (CEC01302_13640) yeeA 1473595..1474653 (+) 1059 WP_001202488.1 FUSC family protein -
  OO829_RS07050 (CEC01302_13650) tmaR 1474825..1475154 (+) 330 WP_000450409.1 DUF496 family protein -
  OO829_RS26880 - 1475255..1475578 (-) 324 WP_269447326.1 EutP/PduV family microcompartment system protein -
  OO829_RS07060 - 1475557..1475637 (+) 81 WP_023441679.1 hypothetical protein -
  OO829_RS07065 - 1475926..1476006 (-) 81 Protein_1391 hypothetical protein -
  OO829_RS07070 (CEC01302_13660) yeeW 1476052..1476246 (-) 195 WP_000988600.1 DUF5983 family protein -
  OO829_RS07075 (CEC01302_13670) cbtA 1476243..1476616 (-) 374 Protein_1393 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  OO829_RS07080 (CEC01302_13680) cbeA 1476705..1477073 (-) 369 WP_001285587.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  OO829_RS07085 (CEC01302_13690) yeeT 1477147..1477368 (-) 222 WP_000692323.1 DUF987 domain-containing protein -
  OO829_RS07090 (CEC01302_13700) radC 1477431..1477907 (-) 477 WP_001186192.1 RadC family protein Machinery gene
  OO829_RS07095 (CEC01302_13710) - 1477922..1478401 (-) 480 WP_000860080.1 antirestriction protein -
  OO829_RS07100 (CEC01302_13720) - 1478483..1479304 (-) 822 WP_001234544.1 DUF932 domain-containing protein -
  OO829_RS07105 (CEC01302_13730) - 1479525..1479935 (-) 411 WP_000846711.1 hypothetical protein -
  OO829_RS07110 (CEC01302_13740) - 1479951..1480634 (-) 684 WP_000775497.1 hypothetical protein -
  OO829_RS07115 (CEC01302_13750) - 1480770..1481840 (-) 1071 WP_000102660.1 patatin-like phospholipase family protein -
  OO829_RS07120 (CEC01302_13760) - 1481837..1482742 (-) 906 WP_000203545.1 diguanylate cyclase regulator RdcB family protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17688.29 Da        Isoelectric Point: 7.2020

>NTDB_id=80555 OO829_RS07090 WP_001186192.1 1477431..1477907(-) (radC) [Escherichia coli strain CEC01302]
MQQISFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=80555 OO829_RS07090 WP_001186192.1 1477431..1477907(-) (radC) [Escherichia coli strain CEC01302]
ATGCAACAGATTTCCTTTCTGCCCGGAGAAATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGTGTGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTACTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3JIA8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392

Multiple sequence alignment