Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   P5V12_RS18800 Genome accession   NZ_CP120416
Coordinates   4410397..4411413 (-) Length   338 a.a.
NCBI ID   WP_316954617.1    Uniprot ID   -
Organism   Teredinibacter sp. KSP-S5-2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4405397..4416413
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5V12_RS18785 (P5V12_18785) - 4406357..4408540 (+) 2184 WP_316954614.1 hypothetical protein -
  P5V12_RS18790 (P5V12_18790) ftsX 4408669..4409649 (-) 981 WP_316954615.1 permease-like cell division protein FtsX -
  P5V12_RS18795 (P5V12_18795) ftsE 4409646..4410332 (-) 687 WP_316954616.1 cell division ATP-binding protein FtsE -
  P5V12_RS18800 (P5V12_18800) pilA 4410397..4411413 (-) 1017 WP_316954617.1 signal recognition particle-docking protein FtsY Machinery gene
  P5V12_RS18805 (P5V12_18805) rsmD 4411531..4412139 (+) 609 WP_316957450.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  P5V12_RS18810 (P5V12_18810) coaD 4412224..4412715 (+) 492 WP_316957451.1 pantetheine-phosphate adenylyltransferase -
  P5V12_RS18815 (P5V12_18815) - 4413091..4415991 (+) 2901 WP_316954618.1 class I adenylate cyclase -
  P5V12_RS21810 lptM 4416088..4416234 (+) 147 WP_410483301.1 LPS translocon maturation chaperone LptM -

Sequence

Protein


Download         Length: 338 a.a.        Molecular weight: 36279.11 Da        Isoelectric Point: 4.7241

>NTDB_id=805527 P5V12_RS18800 WP_316954617.1 4410397..4411413(-) (pilA) [Teredinibacter sp. KSP-S5-2]
MFFKRKKSKADQDKPQEAAAVESTEESKPEGLFARIKRGLARTSSQFSEQLGSLLLGKKEIDDELLEEIETLLLTADVGM
DATTEIIEDLTQRVERKQLADSDALFDALKNSLTGMLDNVEAPLEINADHQPFVILVVGVNGVGKTTTIGKLARRFQDEG
KSVMLAAGDTFRAAAVEQLQVWGERNNVPVVAQHTGADSASVIFDAVQSAKSRNVDVVIADTAGRLHNKSNLMDELEKVK
RVIGKVDDTAPHEVLLVLDAGTGQNALSQADLFNKAVGVTGLALTKLDGTAKGGVIFALAQKFAIPVRFIGVGESAEDLQ
PFSAQSFTQALFGDKAST

Nucleotide


Download         Length: 1017 bp        

>NTDB_id=805527 P5V12_RS18800 WP_316954617.1 4410397..4411413(-) (pilA) [Teredinibacter sp. KSP-S5-2]
ATGTTTTTTAAACGTAAAAAAAGCAAGGCCGATCAGGACAAACCTCAGGAAGCTGCCGCAGTAGAATCGACAGAGGAAAG
TAAGCCTGAAGGTCTTTTTGCCCGCATTAAGCGCGGCTTGGCTCGAACCAGTAGCCAGTTTTCTGAACAACTGGGTAGTC
TTCTTTTAGGCAAAAAAGAAATCGATGACGAGCTATTGGAGGAAATCGAAACGCTGTTGTTAACCGCTGATGTGGGAATG
GACGCAACGACAGAAATTATCGAAGACCTGACTCAGCGCGTGGAGCGTAAGCAGTTGGCGGATTCAGATGCATTGTTTGA
TGCGTTGAAGAATTCTCTGACGGGAATGCTGGATAACGTAGAGGCGCCGCTGGAGATCAACGCAGATCATCAACCCTTTG
TCATTCTGGTTGTTGGGGTGAATGGTGTGGGTAAGACCACCACCATCGGTAAGTTAGCTCGCCGTTTTCAGGATGAGGGA
AAGAGTGTCATGCTGGCTGCCGGGGATACTTTCCGGGCGGCTGCGGTTGAACAACTGCAAGTTTGGGGAGAGCGCAATAA
CGTGCCTGTGGTGGCACAGCATACAGGTGCGGACAGTGCCTCGGTGATATTCGATGCGGTGCAGTCCGCAAAGTCACGTA
ATGTCGATGTTGTTATTGCTGACACAGCAGGGCGTTTGCATAATAAAAGTAACCTGATGGATGAGTTGGAGAAGGTAAAA
CGTGTTATTGGTAAGGTAGATGACACGGCTCCCCATGAAGTGTTATTGGTGTTGGACGCTGGAACGGGCCAGAATGCGCT
AAGTCAGGCTGACTTATTTAATAAAGCCGTTGGCGTAACGGGCTTGGCATTGACCAAGTTGGATGGTACTGCCAAGGGCG
GTGTGATTTTCGCGTTGGCTCAAAAATTTGCTATTCCAGTGCGTTTCATTGGTGTTGGGGAAAGTGCGGAAGATTTGCAG
CCTTTCTCTGCGCAAAGCTTTACTCAAGCCTTATTTGGTGACAAGGCGAGCACGTAA

Domains

Predicted by InterproScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(48-113)

SRP54-type protein, GTPase domain (SRP54)

(132-332)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

53.355

92.604

0.494