Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   P5V12_RS14575 Genome accession   NZ_CP120416
Coordinates   3398290..3399357 (-) Length   355 a.a.
NCBI ID   WP_316953813.1    Uniprot ID   A0AA96HLS4
Organism   Teredinibacter sp. KSP-S5-2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3393290..3404357
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5V12_RS14550 (P5V12_14550) - 3393899..3394402 (-) 504 WP_316953808.1 shikimate kinase -
  P5V12_RS14555 (P5V12_14555) pilQ 3394406..3396586 (-) 2181 WP_316953809.1 type IV pilus secretin PilQ -
  P5V12_RS14560 (P5V12_14560) - 3396591..3397118 (-) 528 WP_316953810.1 pilus assembly protein PilP -
  P5V12_RS14565 (P5V12_14565) - 3397125..3397733 (-) 609 WP_316953811.1 type 4a pilus biogenesis protein PilO -
  P5V12_RS14570 (P5V12_14570) - 3397723..3398289 (-) 567 WP_316953812.1 PilN domain-containing protein -
  P5V12_RS14575 (P5V12_14575) pilM 3398290..3399357 (-) 1068 WP_316953813.1 pilus assembly protein PilM Machinery gene
  P5V12_RS14580 (P5V12_14580) - 3399532..3402105 (+) 2574 WP_316953814.1 penicillin-binding protein 1A -
  P5V12_RS14585 (P5V12_14585) rpmE 3402205..3402420 (-) 216 WP_316953815.1 50S ribosomal protein L31 -

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 38634.77 Da        Isoelectric Point: 4.1975

>NTDB_id=805525 P5V12_RS14575 WP_316953813.1 3398290..3399357(-) (pilM) [Teredinibacter sp. KSP-S5-2]
MGILELFSQKQKPVLGLDVSSTSVKLLEFSRQGDSFRVENYAVRPLPDNSVVEKNINDVEAVAQVIKAVVQSTRTKIKDA
AVAVAGSSVITKVIEMPGDLNEDAMELQISLEADQYIPYPLEEVAIDFDILGPSEKNPENVNVLLAACRRENVDIRSTVL
ELADLHPKVVDVEAYTMERAFGLIREQLEDQEEQVVAIVDIGATMTTLSVLVDGKTVYTREQLFGGRQLTEEIQRRYGLS
AEEAGLAKKQGGLPDDYEPEVLEPFKDAVVQQVTRSLQFFFSSSQYNDVDHILLAGGVASLSGLANLIEEKLGTSVSVAD
PFANMSVSSKVNAANLANDAPSLMIAAGLALRSFD

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=805525 P5V12_RS14575 WP_316953813.1 3398290..3399357(-) (pilM) [Teredinibacter sp. KSP-S5-2]
ATGGGTATTCTCGAACTCTTCAGCCAAAAACAAAAGCCCGTTTTGGGGTTAGATGTTAGCTCTACATCGGTCAAGCTTTT
GGAATTTAGTCGCCAGGGCGATAGCTTTCGGGTGGAGAACTACGCCGTTCGTCCGCTGCCCGATAACTCCGTCGTTGAGA
AGAATATTAACGATGTAGAAGCTGTGGCGCAGGTCATTAAAGCCGTTGTGCAATCTACCAGAACCAAAATTAAGGATGCC
GCTGTCGCAGTGGCTGGATCCTCGGTTATCACGAAAGTTATTGAGATGCCGGGGGACCTTAATGAGGATGCGATGGAGCT
TCAAATCTCCCTTGAGGCGGATCAATACATTCCATATCCTTTGGAAGAGGTTGCGATTGACTTCGATATTCTGGGGCCTT
CTGAAAAAAATCCGGAGAATGTGAATGTTCTGTTGGCGGCCTGTCGTCGGGAGAATGTGGACATTCGTTCTACGGTTCTT
GAGCTGGCTGATTTGCATCCGAAAGTAGTGGATGTTGAGGCCTATACCATGGAAAGGGCGTTTGGCTTAATCCGTGAGCA
GCTGGAGGATCAGGAAGAGCAAGTAGTTGCTATCGTAGATATCGGTGCGACCATGACCACTCTCAGTGTGCTGGTAGACG
GAAAAACCGTTTATACACGAGAACAATTGTTTGGTGGTCGTCAATTAACTGAAGAAATTCAGCGACGTTATGGTTTATCT
GCCGAAGAAGCTGGCTTGGCAAAAAAACAAGGTGGTTTGCCGGACGATTATGAGCCAGAGGTACTTGAGCCTTTTAAAGA
TGCCGTTGTGCAGCAGGTAACTCGCTCCTTACAGTTTTTCTTTTCTTCTAGTCAGTACAATGATGTTGACCATATCCTTC
TAGCCGGAGGCGTTGCTTCGTTATCTGGATTGGCGAACCTGATTGAGGAGAAGCTGGGAACAAGCGTTTCTGTAGCGGAC
CCCTTTGCCAATATGTCAGTCTCTTCCAAAGTGAATGCTGCAAATTTGGCGAATGATGCTCCTTCACTCATGATTGCAGC
AGGTTTAGCATTAAGGAGCTTTGATTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(16-354)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

56.091

99.437

0.558
  comM Acinetobacter nosocomialis M2

56.091

99.437

0.558
  comM Acinetobacter baylyi ADP1

53.541

99.437

0.532
  pilM Legionella pneumophila strain ERS1305867

45.198

99.718

0.451