Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimV   Type   Machinery gene
Locus tag   P3T65_RS24725 Genome accession   NZ_CP120376
Coordinates   5442656..5443801 (-) Length   381 a.a.
NCBI ID   WP_277368675.1    Uniprot ID   -
Organism   Pseudomonas nitroreducens strain L4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5437656..5448801
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3T65_RS24715 (P3T65_24715) - 5438498..5441383 (-) 2886 WP_277368673.1 FimV/HubP family polar landmark protein -
  P3T65_RS24720 (P3T65_24720) - 5441551..5442561 (-) 1011 WP_277368674.1 aspartate-semialdehyde dehydrogenase -
  P3T65_RS24725 (P3T65_24725) fimV 5442656..5443801 (-) 1146 WP_277368675.1 FimV family protein Machinery gene
  P3T65_RS24730 (P3T65_24730) asd 5444077..5445189 (-) 1113 WP_024766916.1 aspartate-semialdehyde dehydrogenase -
  P3T65_RS24735 (P3T65_24735) leuB 5445270..5446352 (-) 1083 WP_277368676.1 3-isopropylmalate dehydrogenase -
  P3T65_RS24740 (P3T65_24740) - 5446440..5447204 (-) 765 WP_277368677.1 class I SAM-dependent methyltransferase -
  P3T65_RS24745 (P3T65_24745) leuD 5447240..5447884 (-) 645 WP_054909166.1 3-isopropylmalate dehydratase small subunit -

Sequence

Protein


Download         Length: 381 a.a.        Molecular weight: 40837.99 Da        Isoelectric Point: 7.4070

>NTDB_id=805281 P3T65_RS24725 WP_277368675.1 5442656..5443801(-) (fimV) [Pseudomonas nitroreducens strain L4]
MWLATAVAAAFLPGMAGALELGDISSRAALGQNLSANIDLRGAADMSSEDVVVSLASAEDFERLGVDRNVVTSGLKFTPD
IGKNGRGVIHVSSNRPIREPYMNFVLQVVWPQGRLVREFTLLLDPPSYVASPVTPPAIAPVAAVRAPQAQPLTPSVANAP
TDSYRIQRNDALWDIASRNRPSGSVSVMQTMAAMQRMNPDAFVDGNINRLKVGQVLRLPSEQQVREQSHAQAVAHVETQN
SQWKAKRNPQLAQQERQLDATHKAEAGSAPAKAEERDNLRLVSGQPGKDKGKVEAEQLAVAQEGLDSARREGEELRSRIS
DLESQTQKLNKLIELKDSQIAGLIARLAEQDRAKAQAASPAGNPQASAGLTAQAAGGEPRP

Nucleotide


Download         Length: 1146 bp        

>NTDB_id=805281 P3T65_RS24725 WP_277368675.1 5442656..5443801(-) (fimV) [Pseudomonas nitroreducens strain L4]
TTGTGGTTGGCAACGGCGGTGGCGGCGGCTTTCCTGCCGGGCATGGCGGGCGCCCTTGAGCTGGGCGACATATCCTCGCG
GGCGGCGCTGGGGCAGAACCTTTCGGCCAATATCGATCTGCGCGGTGCGGCTGACATGAGCTCCGAAGACGTCGTGGTGA
GCCTGGCCTCGGCCGAGGACTTCGAGCGCCTCGGGGTGGACCGCAACGTGGTCACCAGCGGGCTGAAATTCACCCCTGAT
ATCGGCAAGAACGGCCGTGGCGTCATTCATGTCAGCTCGAACAGGCCGATTCGCGAGCCGTACATGAACTTTGTCCTGCA
GGTCGTGTGGCCGCAGGGGCGCCTGGTTCGTGAGTTCACCCTGTTGCTGGATCCGCCGTCCTATGTAGCCAGCCCCGTGA
CGCCGCCGGCCATTGCGCCGGTTGCTGCCGTCCGCGCGCCGCAAGCGCAACCGTTGACGCCTTCTGTGGCCAATGCGCCG
ACTGACAGCTATCGCATCCAGCGCAACGACGCGCTGTGGGACATCGCCTCGCGCAATCGCCCATCCGGCAGCGTCTCGGT
CATGCAGACCATGGCGGCGATGCAGCGGATGAACCCCGATGCCTTCGTCGACGGCAATATCAATCGCCTGAAGGTCGGCC
AGGTACTGCGTCTGCCCAGCGAGCAACAGGTTCGCGAGCAGAGCCATGCCCAGGCAGTGGCCCACGTGGAAACCCAGAAT
TCGCAGTGGAAGGCCAAGCGCAATCCGCAACTGGCGCAGCAGGAGCGCCAACTGGACGCGACCCACAAGGCCGAGGCGGG
CAGTGCGCCGGCGAAGGCCGAAGAGCGCGACAACCTGCGCCTGGTCTCCGGTCAGCCGGGTAAAGATAAAGGCAAGGTGG
AGGCCGAGCAGTTGGCCGTTGCCCAGGAAGGCCTGGACAGCGCACGCCGCGAAGGCGAGGAGCTGCGCAGCCGGATTTCC
GACCTGGAAAGCCAGACCCAGAAGTTGAACAAGCTGATCGAGCTGAAAGACTCGCAGATCGCCGGCCTGATCGCGCGACT
GGCCGAGCAGGATCGCGCCAAGGCCCAGGCCGCCTCGCCAGCCGGCAATCCCCAGGCATCGGCAGGGTTGACCGCTCAGG
CCGCCGGGGGCGAGCCGCGCCCCTGA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(164-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimV Pseudomonas aeruginosa PAK

49.593

96.85

0.48