Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   PVE35_RS02235 Genome accession   NZ_CP120359
Coordinates   488532..490751 (-) Length   739 a.a.
NCBI ID   WP_277373632.1    Uniprot ID   -
Organism   Pseudomonas sp. AA-38     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 483532..495751
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PVE35_RS02215 hslU 483672..485012 (-) 1341 WP_268180901.1 HslU--HslV peptidase ATPase subunit -
  PVE35_RS02220 hslV 485061..485591 (-) 531 WP_024306625.1 ATP-dependent protease subunit HslV -
  PVE35_RS02225 - 485987..486667 (-) 681 WP_268180903.1 SPOR domain-containing protein -
  PVE35_RS02230 argS 486674..488413 (-) 1740 WP_277373631.1 arginine--tRNA ligase -
  PVE35_RS02235 priA 488532..490751 (-) 2220 WP_277373632.1 primosomal protein N' Machinery gene
  PVE35_RS02240 rpmE 490912..491124 (+) 213 WP_003459015.1 50S ribosomal protein L31 -
  PVE35_RS02245 - 491151..491951 (+) 801 WP_277373633.1 thermonuclease family protein -
  PVE35_RS02250 - 491948..493384 (+) 1437 WP_277373634.1 M48 family metalloprotease -
  PVE35_RS02255 - 493487..494755 (+) 1269 WP_268180915.1 malic enzyme-like NAD(P)-binding protein -

Sequence

Protein


Download         Length: 739 a.a.        Molecular weight: 81729.03 Da        Isoelectric Point: 8.4007

>NTDB_id=805180 PVE35_RS02235 WP_277373632.1 488532..490751(-) (priA) [Pseudomonas sp. AA-38]
MPDLILRLALPSPLRRLFDYLAPAGVSRSALQPGVRLRVPFGRRELVGILVEVDSQSEVPADKLKPALELLDARPPLPAS
LFKLCLWTAQYYQHSLGDTLSWALPVLLRQGEPAQVRQERYWLAKTGASVDDPRLARAPRQQEALKALAQHPHGVAHSLL
SQLQLNRDSLQLLHEKGLATVELRRNLPHAKPGHWLAQPELPLNAEQRAAVNAVASGWNQFNAYLLAGVTGSGKTEVYLQ
LIHQCLQAGKQALVLIPEINLGPQTFDRFARRFNARIALLHSAVNDRDRLDAWLAARDGEADIIIGTRSALFTPMKHPGL
IIVDEEHDASYKQQEGLRYHARDLALVRAHQEEVPIVLGSATPSLESLHNAHSGRYALLKLTQRAGGASQPRFLRLDVKS
RPLDSGISGPMQQAIAQTLAAGQQVLVFLNRRGFAPTLLCHDCGWLSECPRCDARMTVHQRYQELRCHHCGHVERQPSHC
PKCQHVDLRPVGAGTERAEERLAVLFPDHPVLRIDRDSTSRKGAMDRLFSTINKGEPCILVGTQMLAKGHHFPRVTLVAI
LDADGGLFSADFRASERMAQLIVQVAGRAGRAEEPGKVIIQSHLADHPLLVQLTEQGYFAFAEQALSERRAAGLPPFCHL
ALLRAEAHKPGQAESFLDEACCEAEHLLGELGLTGIELLGPVPAPMERRAGRFRAQLLLQGNARAPLHRLLTPWSLALEQ
MPSGRAVRWSLDVDPIDLF

Nucleotide


Download         Length: 2220 bp        

>NTDB_id=805180 PVE35_RS02235 WP_277373632.1 488532..490751(-) (priA) [Pseudomonas sp. AA-38]
TTGCCCGACCTGATCCTGCGCCTCGCCCTACCCTCGCCGCTGCGCCGCCTGTTCGACTACCTTGCCCCCGCTGGCGTGTC
GCGCAGCGCCTTGCAGCCAGGTGTACGCCTGCGCGTGCCGTTCGGCCGACGCGAACTGGTCGGCATCCTGGTGGAAGTCG
ACAGCCAGAGCGAGGTACCCGCCGACAAGCTCAAGCCCGCGCTGGAGCTGCTCGATGCGCGCCCACCGCTGCCCGCATCA
CTGTTCAAGCTGTGCCTGTGGACGGCGCAGTATTACCAGCACAGCCTTGGCGACACCCTGAGCTGGGCGCTGCCGGTGCT
GCTGCGCCAGGGTGAGCCGGCGCAGGTGCGCCAGGAACGCTACTGGCTGGCCAAAACGGGCGCCAGCGTCGACGACCCGC
GTCTGGCCCGTGCGCCGCGCCAGCAGGAGGCACTCAAGGCCCTGGCGCAGCACCCGCATGGCGTCGCTCACAGCCTGCTC
AGCCAGTTGCAGCTCAACCGCGACAGCCTGCAACTGCTGCATGAGAAGGGCCTGGCCACGGTCGAACTGCGGCGCAACCT
GCCGCATGCCAAGCCCGGACATTGGCTGGCGCAACCGGAACTGCCGCTCAATGCCGAGCAGCGCGCCGCCGTCAATGCCG
TGGCCTCGGGCTGGAACCAGTTCAACGCCTATCTGCTGGCTGGCGTGACCGGCAGCGGCAAGACCGAGGTCTATCTGCAA
CTGATCCACCAGTGCCTGCAAGCCGGCAAACAGGCCCTGGTGCTGATCCCGGAGATCAACCTCGGCCCGCAGACCTTCGA
CCGCTTCGCCCGGCGCTTCAACGCGCGCATCGCCCTGTTGCACTCGGCGGTGAACGACCGTGACCGCCTCGATGCCTGGT
TGGCGGCGCGCGATGGCGAGGCCGACATCATCATCGGCACCCGCTCGGCGCTGTTCACGCCGATGAAGCACCCAGGGCTG
ATCATCGTCGACGAAGAACACGACGCCTCCTATAAACAGCAGGAAGGCCTGCGCTACCACGCTCGCGACCTGGCGCTGGT
GCGCGCCCATCAGGAAGAGGTGCCCATCGTCCTCGGCTCGGCCACACCTTCGCTGGAAAGCCTGCACAACGCCCATAGCG
GCCGCTACGCCCTGCTCAAGCTGACCCAGCGCGCCGGCGGCGCCAGCCAGCCACGTTTCCTGCGCCTGGACGTGAAGAGC
CGGCCGCTGGACTCGGGCATCTCCGGGCCGATGCAGCAGGCCATCGCCCAGACCCTGGCGGCTGGCCAACAGGTGCTGGT
GTTCCTCAACCGCCGCGGCTTCGCCCCGACCCTGCTCTGTCACGACTGCGGCTGGCTGTCGGAATGCCCTCGCTGCGATG
CGCGCATGACCGTGCATCAGCGCTACCAGGAACTGCGGTGCCATCACTGCGGCCATGTCGAGCGCCAGCCGAGCCACTGC
CCCAAGTGCCAGCACGTCGACCTGCGCCCGGTAGGAGCCGGCACCGAGCGAGCCGAAGAGCGCCTGGCCGTGCTGTTCCC
CGATCATCCGGTGCTGCGCATCGACCGCGACAGCACCTCGCGAAAAGGCGCGATGGATCGCCTGTTCAGCACCATCAACA
AGGGCGAACCGTGCATCCTGGTCGGCACCCAGATGCTCGCCAAGGGCCACCACTTCCCGCGCGTCACCCTGGTGGCCATT
CTCGATGCCGACGGAGGCTTGTTCTCCGCCGACTTCCGCGCCAGCGAGCGCATGGCCCAGTTGATCGTGCAGGTGGCTGG
CCGCGCCGGGCGCGCCGAAGAGCCCGGCAAGGTGATCATCCAGAGCCACCTGGCCGACCATCCGCTGCTGGTGCAGCTCA
CCGAACAGGGCTACTTCGCCTTCGCCGAACAGGCCCTGAGCGAGCGCCGCGCGGCCGGCCTGCCACCCTTCTGCCACCTG
GCGCTGCTGCGCGCAGAAGCGCATAAACCCGGCCAGGCCGAGAGCTTTCTCGATGAAGCCTGCTGCGAAGCCGAACACCT
GCTGGGCGAGCTGGGCCTGACCGGCATCGAACTGCTCGGCCCGGTGCCTGCGCCGATGGAGCGCCGCGCCGGGCGCTTCC
GCGCGCAACTGCTGCTGCAAGGCAATGCCCGCGCGCCCCTGCACCGCCTGCTCACCCCCTGGTCTCTGGCACTGGAGCAG
ATGCCCAGCGGCCGCGCGGTGCGCTGGTCGCTGGACGTCGACCCGATCGATCTTTTCTAA

Domains

Predicted by InterproScan.

PriA DNA helicase Cys-rich region (CRR) domain (Zn_ribbon_PriA)

(449-475)

3DNA-binding domain (3BD) (PriA_3primeBD)

(9-105)

DEAD/DEAH box helicase (DEAD)

(207-367)

Helicase conserved C-terminal domain (Helicase_C)

(525-592)

Primosomal protein N C-terminal domain (PriA_C)

(636-735)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

48.365

99.323

0.48