Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   L6499_RS10090 Genome accession   NZ_AP022986
Coordinates   1971083..1971370 (+) Length   95 a.a.
NCBI ID   WP_000648331.1    Uniprot ID   A0A2A8KZX2
Organism   Bacillus cereus strain 30052     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1966083..1976370
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6499_RS10070 (BC30052_1932) - 1967260..1967458 (+) 199 Protein_1908 DUF4083 domain-containing protein -
  L6499_RS10075 (BC30052_1933) - 1967490..1967951 (+) 462 WP_000024996.1 NUDIX hydrolase -
  L6499_RS10080 (BC30052_1934) nadE 1967998..1968816 (-) 819 WP_000174879.1 ammonia-dependent NAD(+) synthetase -
  L6499_RS10085 (BC30052_1936) - 1969088..1970966 (+) 1879 Protein_1911 ABC transporter permease -
  L6499_RS10090 (BC30052_1937) abrB 1971083..1971370 (+) 288 WP_000648331.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  L6499_RS10095 (BC30052_1938) - 1971645..1972595 (+) 951 WP_078384349.1 serine protease -
  L6499_RS10100 (BC30052_1939) - 1972636..1972944 (-) 309 WP_001259894.1 helix-turn-helix transcriptional regulator -
  L6499_RS10105 (BC30052_1940) - 1973052..1973987 (+) 936 WP_000877933.1 aldo/keto reductase -
  L6499_RS10110 (BC30052_1941) - 1974036..1975211 (+) 1176 WP_078384348.1 MFS transporter -
  L6499_RS10115 (BC30052_1942) - 1975400..1975624 (-) 225 WP_000162601.1 hypothetical protein -
  L6499_RS10120 (BC30052_1943) - 1975708..1976055 (-) 348 WP_000426313.1 DUF4257 domain-containing protein -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10645.40 Da        Isoelectric Point: 6.3179

>NTDB_id=80494 L6499_RS10090 WP_000648331.1 1971083..1971370(+) (abrB) [Bacillus cereus strain 30052]
MKATGVIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEEDKVILQKYQPYNACQITGDVSNQNISLANGNITVSIDGAK
YLIKEIEKFLNKSEV

Nucleotide


Download         Length: 288 bp        

>NTDB_id=80494 L6499_RS10090 WP_000648331.1 1971083..1971370(+) (abrB) [Bacillus cereus strain 30052]
ATGAAAGCAACAGGAGTTATTCGAAAAGTAGACGAATTAGGACGAATTGTTATTCCTAAAGAATTACGTGATGTATTGGG
AATACAAATCAAATCACCGCTTGAAATTTTCGTAGAAGAAGACAAAGTCATTTTACAAAAATATCAACCTTACAATGCTT
GTCAAATAACAGGTGATGTTTCAAATCAAAACATATCATTAGCAAATGGAAACATTACTGTTAGTATAGATGGAGCGAAA
TATTTAATAAAAGAAATAGAGAAGTTTTTAAACAAGAGTGAGGTTTAG

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

54.444

94.737

0.516

Multiple sequence alignment