Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   L6499_RS06820 Genome accession   NZ_AP022986
Coordinates   1335831..1336154 (-) Length   107 a.a.
NCBI ID   WP_000578883.1    Uniprot ID   A0A150B540
Organism   Bacillus cereus strain 30052     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1330831..1341154
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6499_RS06795 (BC30052_1267) - 1331110..1332396 (+) 1287 WP_042513060.1 D-alanyl-D-alanine carboxypeptidase family protein -
  L6499_RS06800 (BC30052_1268) - 1332591..1333160 (+) 570 WP_000767813.1 signal peptidase I -
  L6499_RS06805 (BC30052_1269) - 1333223..1333810 (+) 588 WP_000172840.1 CalY family protein -
  L6499_RS06810 (BC30052_1270) - 1333971..1334765 (+) 795 WP_202321964.1 DUF4047 domain-containing protein -
  L6499_RS06815 (BC30052_1271) calY 1335162..1335755 (+) 594 WP_000053731.1 biofilm matrix protein CalY -
  L6499_RS06820 (BC30052_1272) sinR 1335831..1336154 (-) 324 WP_000578883.1 helix-turn-helix domain-containing protein Regulator
  L6499_RS06825 (BC30052_1273) - 1336234..1336368 (-) 135 WP_000276215.1 anti-repressor SinI family protein -
  L6499_RS06830 (BC30052_1274) inhA1 1336703..1339090 (+) 2388 WP_202321973.1 M6 family metalloprotease immune inhibitor InhA1 -
  L6499_RS06835 (BC30052_1276) - 1339260..1340627 (+) 1368 WP_202321975.1 aldehyde dehydrogenase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12358.20 Da        Isoelectric Point: 9.6248

>NTDB_id=80491 L6499_RS06820 WP_000578883.1 1335831..1336154(-) (sinR) [Bacillus cereus strain 30052]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTKENHLDSEWTQLV
KDAMSSGVSKEQFREFLEFTKWKQNQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=80491 L6499_RS06820 WP_000578883.1 1335831..1336154(-) (sinR) [Bacillus cereus strain 30052]
ATGATTGGAGAACGTATAAAACGCCTGCGTTTACAAAAAGGTATTTCATTAACTGAACTTGCCGAAAAAGCTGGCGTTGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAAAACCCTTCCATTCAGTTTCTTGAAAAAATTGCAGCAGTTC
TACAAATTCCAGTTGATACTCTACTTCATGATGAAACAACAAAGGAAAATCACTTAGACTCCGAATGGACACAACTCGTT
AAAGATGCGATGAGCTCCGGCGTCTCCAAAGAACAATTTCGTGAATTTCTTGAATTTACAAAATGGAAGCAAAATCAAAA
ATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-60)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A150B540

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

67.89

100

0.692

Multiple sequence alignment