Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   P0Y57_RS07325 Genome accession   NZ_CP120231
Coordinates   1855281..1856666 (-) Length   461 a.a.
NCBI ID   WP_159730056.1    Uniprot ID   -
Organism   MAG: Sphingobacterium sp. isolate MAG     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1850281..1861666
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P0Y57_RS07310 (P0Y57_07310) nagB 1851152..1853080 (-) 1929 WP_153845340.1 glucosamine-6-phosphate deaminase -
  P0Y57_RS07315 (P0Y57_07315) - 1853222..1854370 (-) 1149 WP_288066030.1 methionine aminotransferase -
  P0Y57_RS07320 (P0Y57_07320) - 1854443..1855126 (+) 684 WP_288066032.1 TlpA disulfide reductase family protein -
  P0Y57_RS07325 (P0Y57_07325) radA 1855281..1856666 (-) 1386 WP_159730056.1 DNA repair protein RadA Machinery gene
  P0Y57_RS07330 (P0Y57_07330) - 1856900..1858060 (-) 1161 WP_288066035.1 dipeptidase -
  P0Y57_RS07335 (P0Y57_07335) - 1858057..1859781 (-) 1725 WP_288066037.1 serine hydrolase domain-containing protein -
  P0Y57_RS07340 (P0Y57_07340) xseA 1859979..1861265 (+) 1287 WP_288066038.1 exodeoxyribonuclease VII large subunit -
  P0Y57_RS07345 (P0Y57_07345) xseB 1861308..1861529 (+) 222 WP_075990493.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 50557.91 Da        Isoelectric Point: 7.0182

>NTDB_id=804770 P0Y57_RS07325 WP_159730056.1 1855281..1856666(-) (radA) [MAG: Sphingobacterium sp. isolate MAG]
MAKSKSAYFCQNCGYESPKWMGQCPSCKQWNSFVEEVVEKSSSKVPEWRSSTTGGSTKRANKAAIIHEIVYQDELRILTP
DQEFNRVLGGGIVPGSLVLIGGEPGIGKSTLMLQLALSIPQVKTLYISGEESEQQIKMRAERLSQSSKANCYILTETSTQ
NIFKQIETVQPNVIVIDSIQTLHSSQIESAPGSVSQVRECTAELLRFAKETSTPVFIVGHITKDGSIAGPKVLEHMVDTV
LQFEGDRHHVYRILRAVKNRFGSASELGIYEMQGSGLREVSNPSEIMISQRDEPVSGVSIAAMLEGVRPMMIEVQALVSN
SAFGTAQRSSTGYDTKRLNMLLAVLEKRFGFRLSAQDVFLNIAGGLRVEDPAIDLAVVVAIISSQQDIAIRSNLTFAGEV
GLSGEIRAVNRIEQRIQEAEKLGFDGIFISKFNTKGLDAKKYNIAIRPVAKLEDIFSALFG

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=804770 P0Y57_RS07325 WP_159730056.1 1855281..1856666(-) (radA) [MAG: Sphingobacterium sp. isolate MAG]
ATGGCAAAATCAAAATCAGCATATTTCTGTCAAAACTGTGGCTACGAGTCTCCCAAATGGATGGGGCAATGCCCTTCTTG
CAAGCAATGGAATAGTTTTGTTGAGGAAGTCGTCGAAAAATCGAGCTCAAAAGTGCCCGAATGGCGTAGTTCCACCACAG
GCGGAAGTACGAAAAGAGCGAATAAAGCTGCCATCATCCACGAAATCGTCTATCAGGATGAATTACGTATATTGACTCCA
GATCAGGAGTTTAACCGGGTTCTTGGTGGTGGTATTGTTCCGGGATCATTGGTACTTATCGGAGGCGAACCCGGTATTGG
GAAGTCTACGTTGATGTTACAGCTCGCTTTATCGATCCCACAAGTCAAGACACTTTATATTTCTGGGGAAGAAAGTGAAC
AGCAAATTAAGATGCGGGCAGAGCGATTGTCACAATCTTCTAAAGCAAATTGTTATATCCTTACCGAGACATCTACTCAA
AATATTTTCAAGCAGATCGAGACGGTGCAGCCCAATGTCATTGTAATAGATTCTATACAGACTTTACATTCCTCACAAAT
TGAATCGGCGCCAGGCTCGGTTTCTCAGGTACGCGAATGTACCGCAGAATTGCTTCGGTTTGCAAAGGAAACCAGTACAC
CAGTTTTTATTGTAGGGCATATTACCAAGGACGGATCTATTGCAGGCCCCAAGGTTTTAGAACATATGGTGGATACGGTG
CTTCAATTCGAGGGTGATCGTCATCATGTATACCGGATTTTACGGGCCGTAAAAAATCGTTTTGGATCTGCTTCAGAACT
GGGTATTTATGAAATGCAGGGCTCGGGATTGAGGGAGGTGTCAAATCCTTCGGAGATTATGATTTCCCAGCGCGATGAAC
CTGTTAGTGGCGTTTCCATTGCGGCGATGCTCGAAGGAGTGCGCCCTATGATGATTGAAGTACAGGCTCTGGTGAGTAAT
TCGGCGTTTGGAACTGCTCAGCGCTCTTCTACAGGTTACGATACGAAGCGATTAAACATGCTGTTGGCTGTTTTAGAGAA
ACGCTTTGGTTTTAGGTTAAGTGCACAGGACGTGTTTTTGAATATTGCCGGTGGGTTGCGTGTTGAAGATCCTGCGATCG
ATTTGGCTGTTGTTGTTGCAATTATTTCTTCACAACAAGATATCGCGATTCGATCCAATCTGACTTTTGCCGGTGAGGTT
GGTTTATCGGGTGAGATAAGGGCCGTAAATCGCATTGAACAGCGTATACAAGAGGCCGAGAAGCTGGGCTTTGATGGTAT
TTTTATTTCTAAATTCAATACCAAAGGATTGGATGCTAAAAAATATAATATTGCCATTCGTCCGGTTGCCAAATTGGAGG
ACATCTTCAGTGCTTTGTTTGGCTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(348-432)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(75-225)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae R6

52.278

100

0.523
  radA Streptococcus pneumoniae Rx1

52.278

100

0.523
  radA Streptococcus pneumoniae D39

52.278

100

0.523
  radA Streptococcus pneumoniae TIGR4

52.278

100

0.523
  radA Streptococcus mitis NCTC 12261

52.278

100

0.523
  radA Streptococcus mitis SK321

52.061

100

0.521
  radA Bacillus subtilis subsp. subtilis str. 168

53.725

96.095

0.516