Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   RKQ73_RS08840 Genome accession   NZ_CP134548
Coordinates   1825754..1826389 (+) Length   211 a.a.
NCBI ID   WP_000264035.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain XH1051     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1820754..1831389
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RKQ73_RS08815 (RKQ73_08820) - 1821594..1822607 (+) 1014 WP_001096106.1 aminoglycoside phosphotransferase family protein -
  RKQ73_RS08820 (RKQ73_08825) murU 1822607..1823296 (+) 690 WP_000646456.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU -
  RKQ73_RS08825 (RKQ73_08830) rsmG 1823384..1824016 (+) 633 WP_000553193.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  RKQ73_RS08830 (RKQ73_08835) - 1824038..1824820 (+) 783 WP_000057212.1 ParA family protein -
  RKQ73_RS08835 (RKQ73_08840) - 1824817..1825704 (+) 888 WP_000023429.1 ParB/RepB/Spo0J family partition protein -
  RKQ73_RS08840 (RKQ73_08845) exbB 1825754..1826389 (+) 636 WP_000264035.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  RKQ73_RS08845 (RKQ73_08850) - 1826405..1826833 (+) 429 WP_000669683.1 biopolymer transporter ExbD -
  RKQ73_RS08850 (RKQ73_08855) msbA 1826830..1828557 (+) 1728 WP_001070729.1 lipid A export permease/ATP-binding protein MsbA -
  RKQ73_RS08855 (RKQ73_08860) lpxK 1828560..1829570 (+) 1011 WP_000050457.1 tetraacyldisaccharide 4'-kinase -
  RKQ73_RS08860 (RKQ73_08865) kdsB 1829580..1830341 (+) 762 WP_000680697.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  RKQ73_RS08865 (RKQ73_08870) - 1830353..1831333 (+) 981 WP_001075419.1 DNA polymerase III subunit delta' -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23211.10 Da        Isoelectric Point: 6.4861

>NTDB_id=804752 RKQ73_RS08840 WP_000264035.1 1825754..1826389(+) (exbB) [Acinetobacter baumannii strain XH1051]
MWELVKAGGWLMLPLILCSILTVAISIERFVRLRRSQVLPKVLMNDGSADISVVITNLEQDNNAQSTALGNILKAGFEHQ
EHGEQFARAQMEAMASQEISYLEKNINFLGTLSAIAPLLGLLGTVVGIIESFLVIDFGSAGSPSLMIPGISKALITTAVG
MLIAIPALISYRYFQRVVQDYIAELEQQSTLFHASLFYKRSSVMQEHRRVG

Nucleotide


Download         Length: 636 bp        

>NTDB_id=804752 RKQ73_RS08840 WP_000264035.1 1825754..1826389(+) (exbB) [Acinetobacter baumannii strain XH1051]
ATGTGGGAACTTGTGAAAGCGGGCGGCTGGTTAATGCTGCCTTTAATTTTGTGTTCAATTTTAACCGTCGCAATTAGTAT
TGAGCGTTTTGTACGTTTAAGACGTTCACAAGTTTTACCTAAAGTACTAATGAATGATGGCAGTGCAGATATTTCTGTTG
TCATAACAAATTTGGAACAGGATAATAATGCGCAAAGCACGGCATTGGGCAATATTCTAAAAGCTGGTTTTGAGCATCAG
GAACATGGCGAACAATTTGCTCGAGCACAAATGGAAGCTATGGCTTCTCAAGAAATTTCTTATTTAGAAAAAAATATTAA
CTTCTTAGGGACCTTAAGTGCTATAGCGCCTCTACTAGGGCTGCTTGGAACAGTTGTGGGAATTATTGAGTCTTTTTTGG
TTATTGATTTTGGTTCGGCAGGTAGTCCTAGTTTAATGATTCCCGGTATTTCCAAGGCTTTGATCACAACAGCAGTTGGT
ATGCTCATTGCAATTCCTGCACTTATTTCCTATCGATATTTTCAAAGAGTAGTGCAAGATTATATTGCTGAGTTAGAGCA
ACAATCTACGCTATTTCATGCCTCATTGTTTTACAAACGTTCTTCAGTCATGCAAGAACATCGCCGCGTTGGTTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

43.455

90.521

0.393