Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   O2602_RS13015 Genome accession   NZ_CP120208
Coordinates   2703131..2703946 (-) Length   271 a.a.
NCBI ID   WP_276210502.1    Uniprot ID   -
Organism   Heyndrickxia coagulans strain HOM5301     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 2698131..2708946
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O2602_RS12995 - 2699679..2699837 (-) 159 WP_014097362.1 small, acid-soluble spore protein K -
  O2602_RS13000 - 2699923..2700903 (-) 981 WP_026684725.1 metal-dependent hydrolase -
  O2602_RS13005 mutY 2701082..2702200 (+) 1119 WP_276210500.1 A/G-specific adenine glycosylase -
  O2602_RS13010 - 2702833..2703150 (-) 318 WP_276210501.1 YfhH family protein -
  O2602_RS13015 recX 2703131..2703946 (-) 816 WP_276210502.1 recombination regulator RecX Regulator
  O2602_RS13020 - 2704033..2704155 (+) 123 WP_014097357.1 YfhE family protein -
  O2602_RS13025 - 2704405..2704587 (+) 183 WP_276210503.1 YfhD family protein -
  O2602_RS13030 trpA 2704850..2705641 (-) 792 WP_276210504.1 tryptophan synthase subunit alpha -
  O2602_RS13035 - 2705634..2705780 (-) 147 WP_195854852.1 hypothetical protein -
  O2602_RS13040 trpB 2705773..2706978 (-) 1206 WP_071452051.1 tryptophan synthase subunit beta -
  O2602_RS13045 trpCF 2706956..2708380 (-) 1425 WP_276210505.1 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF -

Sequence

Protein


Download         Length: 271 a.a.        Molecular weight: 31576.34 Da        Isoelectric Point: 7.5091

>NTDB_id=804725 O2602_RS13015 WP_276210502.1 2703131..2703946(-) (recX) [Heyndrickxia coagulans strain HOM5301]
MPVITKISVQKNNKERYNIFLDGQYRFSVDEEVLARYQLLKGKELDELDIEAILAEDDIRKGVNTAIHFLSYRMRSEKEV
RDDLIKKEFVPEVIRSVISKLYEMQYLDDAEFAASFVRTQMNTTHKGPVVIRRELQQKGIAPELVKKALEIFDADQQVEH
ALALAEKLSRQHARLSEKLLKQKVEQGLVVKGYPPEVISAAMAVLHIEKDEEAEWEALLQHAEKAKRKYGKFSGYAYRQK
MKQFLYRKGFPVDLIDRYLREEEDGDGKKIQ

Nucleotide


Download         Length: 816 bp        

>NTDB_id=804725 O2602_RS13015 WP_276210502.1 2703131..2703946(-) (recX) [Heyndrickxia coagulans strain HOM5301]
GTGCCGGTCATTACAAAAATCTCAGTTCAAAAAAATAATAAAGAACGATACAATATTTTTCTTGACGGCCAGTACCGATT
CAGTGTTGATGAAGAAGTGCTGGCACGGTACCAGCTTCTAAAAGGGAAAGAATTGGATGAGCTTGATATTGAAGCGATCC
TTGCCGAGGATGATATCCGGAAAGGCGTCAACACCGCTATCCATTTTCTTTCCTACCGGATGCGGTCGGAAAAAGAAGTA
CGTGATGATTTGATAAAAAAGGAATTTGTGCCGGAAGTCATCCGGAGTGTCATATCAAAGCTTTATGAAATGCAGTATCT
GGATGATGCGGAATTTGCCGCAAGTTTTGTACGAACACAAATGAATACAACACATAAAGGGCCTGTTGTTATTAGAAGGG
AACTTCAGCAAAAAGGCATTGCACCGGAGCTTGTGAAAAAGGCGCTTGAAATTTTTGATGCGGATCAGCAAGTGGAACAC
GCCCTTGCCCTTGCAGAAAAACTGTCCAGGCAGCATGCCCGGTTGTCAGAGAAGCTTTTAAAGCAAAAAGTGGAGCAGGG
GCTTGTCGTAAAAGGTTATCCGCCTGAAGTGATTTCCGCTGCGATGGCGGTGCTTCATATTGAAAAGGATGAAGAAGCGG
AGTGGGAAGCCCTTCTTCAGCACGCTGAAAAAGCAAAGCGCAAATACGGAAAGTTTTCGGGATATGCATACAGGCAAAAA
ATGAAGCAGTTTTTATACCGGAAAGGGTTCCCGGTTGATTTAATAGACCGCTACTTGCGAGAAGAGGAGGATGGAGATGG
AAAAAAGATACAGTGA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-202)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

52.471

97.048

0.509