Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   O2602_RS09210 Genome accession   NZ_CP120208
Coordinates   1940052..1941176 (-) Length   374 a.a.
NCBI ID   WP_276210287.1    Uniprot ID   -
Organism   Heyndrickxia coagulans strain HOM5301     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1935052..1946176
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O2602_RS09165 - 1935617..1936408 (+) 792 WP_276210280.1 YqhG family protein -
  O2602_RS09170 - 1936442..1936618 (-) 177 WP_014098029.1 YqzE family protein -
  O2602_RS09175 - 1936605..1937162 (-) 558 WP_276210281.1 shikimate kinase -
  O2602_RS09180 comGG 1937159..1937527 (-) 369 WP_276210282.1 competence type IV pilus minor pilin ComGG -
  O2602_RS09185 comGF 1937524..1938009 (-) 486 WP_276210283.1 competence type IV pilus minor pilin ComGF -
  O2602_RS09190 - 1937972..1938280 (-) 309 WP_035187947.1 type II secretion system protein -
  O2602_RS09195 comGD 1938267..1938710 (-) 444 WP_276210284.1 competence type IV pilus minor pilin ComGD -
  O2602_RS09200 comGC 1938707..1939018 (-) 312 WP_276210285.1 competence type IV pilus major pilin ComGC -
  O2602_RS09205 comGB 1939088..1940152 (-) 1065 WP_276210286.1 competence type IV pilus assembly protein ComGB -
  O2602_RS09210 comGA 1940052..1941176 (-) 1125 WP_276210287.1 competence type IV pilus ATPase ComGA Machinery gene
  O2602_RS09215 - 1941371..1942078 (+) 708 WP_014098020.1 metalloregulator ArsR/SmtB family transcription factor -
  O2602_RS09220 - 1942156..1942398 (+) 243 WP_014098019.1 DUF2626 domain-containing protein -
  O2602_RS09225 - 1942467..1943096 (-) 630 WP_046720741.1 MBL fold metallo-hydrolase -
  O2602_RS09230 - 1943226..1943399 (+) 174 WP_014098017.1 DUF2759 domain-containing protein -
  O2602_RS09235 - 1943702..1944670 (-) 969 WP_276210288.1 ROK family glucokinase -
  O2602_RS09240 - 1944663..1944884 (-) 222 WP_276210289.1 YqgQ family protein -

Sequence

Protein


Download         Length: 374 a.a.        Molecular weight: 42242.82 Da        Isoelectric Point: 9.5816

>NTDB_id=804713 O2602_RS09210 WP_276210287.1 1940052..1941176(-) (comGA) [Heyndrickxia coagulans strain HOM5301]
MSVEKIAELLIGQAVKNNVTDVHIVPKEKHYHVQFRQYGRLYPHRNLSAKAGERLISHLKFMSSMDISEKRKPQSGSFAM
NVLQQTISLRISTLPTSLSKESLVIRILPHEEKFQLSQISLFPSSTKKLMALLNHSHGMLIFSGPTGSGKSTTMYTLVEH
CAKRFLRNVITLEDPVEKQSDSFLQVQVNEKAGITYSTGLKAILRHDPDIILVGEIRDAETARIAIRASLTGHLVLTTLH
TRDAKGAIYRLMEFGVSIHEMEQTLLAVSAQRLITLRCPVCGGIRCPHDSQDCPRSREKRQTAVYELLYGKNLQRVLKEA
KGEQVCYHYPTLKEWLRKGIVLGYISEEEYHRWIAEGEEADKPQTAGALSYPGR

Nucleotide


Download         Length: 1125 bp        

>NTDB_id=804713 O2602_RS09210 WP_276210287.1 1940052..1941176(-) (comGA) [Heyndrickxia coagulans strain HOM5301]
ATGTCAGTTGAAAAAATTGCGGAACTTTTGATCGGGCAGGCGGTAAAAAACAATGTGACCGATGTCCATATCGTTCCGAA
AGAAAAGCATTACCATGTCCAGTTCCGGCAGTACGGAAGGCTGTACCCCCACCGCAACCTTTCCGCGAAAGCCGGGGAAA
GGCTGATATCCCATTTGAAATTTATGTCTTCCATGGATATCAGTGAAAAACGGAAACCCCAAAGCGGGTCGTTCGCCATG
AACGTTTTGCAGCAGACGATCTCCTTAAGGATTTCGACGCTGCCAACCTCTCTTTCCAAAGAGAGCCTCGTTATTCGGAT
CTTGCCCCATGAAGAAAAATTCCAGCTCAGCCAAATTTCACTTTTTCCATCGAGCACAAAAAAATTAATGGCGCTGCTCA
ACCATTCGCATGGCATGCTGATTTTCAGCGGCCCGACCGGAAGCGGCAAGTCTACGACGATGTATACGCTTGTTGAGCAC
TGCGCAAAACGGTTTTTACGGAATGTGATTACACTGGAAGACCCTGTTGAAAAACAAAGCGATTCGTTTTTACAGGTACA
GGTGAATGAAAAAGCAGGTATTACTTACAGCACAGGGCTGAAAGCGATTTTGCGCCATGATCCGGATATTATCCTGGTGG
GGGAAATCCGTGATGCCGAAACAGCAAGAATTGCGATCCGCGCATCACTCACCGGCCATCTCGTGCTGACGACATTGCAT
ACGCGTGACGCAAAGGGCGCGATTTACAGGCTGATGGAATTTGGGGTGAGCATCCACGAAATGGAGCAGACTTTACTCGC
TGTTAGCGCACAGCGGCTGATCACATTGCGTTGTCCGGTATGCGGTGGGATCCGCTGTCCGCATGATTCGCAAGATTGCC
CACGCAGCCGGGAAAAGCGGCAAACCGCGGTATATGAGCTGCTGTACGGGAAAAATTTGCAGCGAGTGCTGAAAGAAGCA
AAGGGAGAACAGGTCTGCTACCATTATCCGACACTGAAAGAATGGCTCAGAAAGGGGATTGTGCTTGGATACATTTCTGA
AGAAGAGTATCACCGCTGGATTGCCGAAGGGGAAGAAGCGGATAAGCCTCAAACTGCAGGGGCGCTTTCTTACCCGGGTC
GGTGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-274)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

54.958

94.385

0.519