Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   O2602_RS08920 Genome accession   NZ_CP120208
Coordinates   1889480..1891183 (-) Length   567 a.a.
NCBI ID   WP_276210263.1    Uniprot ID   -
Organism   Heyndrickxia coagulans strain HOM5301     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1884480..1896183
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O2602_RS08900 - 1885953..1886195 (+) 243 WP_014098074.1 DUF2627 domain-containing protein -
  O2602_RS08905 - 1886205..1886948 (-) 744 WP_014098073.1 glycerophosphodiester phosphodiesterase -
  O2602_RS08910 spo0A 1887067..1887852 (-) 786 WP_014098072.1 sporulation transcription factor Spo0A -
  O2602_RS08915 spoIVB 1888018..1889301 (-) 1284 WP_276210262.1 SpoIVB peptidase -
  O2602_RS08920 recN 1889480..1891183 (-) 1704 WP_276210263.1 DNA repair protein RecN Machinery gene
  O2602_RS08925 argR 1891201..1891650 (-) 450 WP_014098068.1 transcriptional regulator ArgR -
  O2602_RS08930 - 1891820..1892644 (-) 825 WP_014098067.1 TlyA family RNA methyltransferase -
  O2602_RS08935 dxs 1892645..1894546 (-) 1902 WP_014098066.1 1-deoxy-D-xylulose-5-phosphate synthase -
  O2602_RS08940 - 1894695..1895564 (-) 870 WP_017550507.1 polyprenyl synthetase family protein -
  O2602_RS08945 - 1895567..1895794 (-) 228 WP_013859605.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 567 a.a.        Molecular weight: 64615.54 Da        Isoelectric Point: 4.8352

>NTDB_id=804712 O2602_RS08920 WP_276210263.1 1889480..1891183(-) (recN) [Heyndrickxia coagulans strain HOM5301]
MLQELSIKNFAIIDALTLSFEAGLTVLTGETGAGKSIIIDAIQLLTGGRGSSEFVRHGENRAEIEGLFLVEDGHPCMDRA
REFGIEIEEGMVILRRDISKTGKSVCRINGKLVTISVLREIGSTLIDIHSQHETQELLNETYHLPLLDQYGQSEIETALL
DYEKLYKKYEAVYGRLKRMNENDQQLAQRLDLIQFQHEEIQNAGLRLHEDEELAEEKRKLVNFERLFESLNTGYEALAGE
QHGLDWLSLAMSHLEAAAEVDGELSDILESVQSCFYTLEDMSRSIRSRLDGLEFDPERLNVIEARLNEINQLKRKYGSSI
EEILEYGSKIEEEIESIVNRDHHVELLEKELQTVKRDLYLEAKQLSDLRKKWAEKLTKNIHSELKQLYMDKTKFEVRFLA
AADDYYEADDIPFRRDGLDQVEFYISTNPGEPLKPLAKTASGGELSRIMLALKTIFSRHQGITSVIFDEVDTGVSGRVAQ
AIAEKIYRISVHSQVLCITHLPQVAAMADTHLLIMKETEKERTRTKVKPLGQEEKIKEIGRMISGVEMTELTRQHAKELL
ELAEAIK

Nucleotide


Download         Length: 1704 bp        

>NTDB_id=804712 O2602_RS08920 WP_276210263.1 1889480..1891183(-) (recN) [Heyndrickxia coagulans strain HOM5301]
TTGCTGCAGGAATTATCGATTAAAAATTTTGCCATTATTGATGCATTAACGCTTTCATTTGAAGCCGGGCTGACCGTCCT
GACAGGGGAGACCGGTGCCGGCAAATCGATTATTATCGATGCCATCCAGCTTCTAACAGGCGGGAGAGGGTCATCGGAGT
TCGTCCGGCACGGGGAAAACCGTGCTGAGATTGAGGGCTTATTTCTGGTCGAGGACGGTCATCCGTGCATGGATCGCGCC
CGCGAATTCGGCATTGAGATTGAGGAAGGCATGGTCATTTTGCGGCGCGATATATCGAAAACAGGGAAAAGCGTTTGCCG
CATCAACGGAAAACTTGTGACGATTTCGGTGCTGCGCGAAATCGGGTCGACTTTAATTGATATCCACAGCCAGCACGAAA
CGCAGGAACTGCTGAACGAAACGTACCATCTGCCACTGCTTGACCAGTACGGGCAAAGTGAGATTGAAACGGCTCTCCTT
GATTACGAAAAATTGTATAAAAAATACGAAGCCGTTTACGGGCGGTTAAAAAGAATGAATGAAAACGACCAGCAGCTCGC
CCAGCGCCTTGACCTCATCCAATTCCAGCATGAGGAAATCCAAAACGCCGGACTGAGGCTGCATGAAGACGAGGAATTAG
CGGAAGAAAAACGAAAACTCGTCAATTTTGAACGGCTGTTTGAATCATTGAATACGGGGTATGAAGCGCTTGCCGGGGAA
CAGCATGGCCTCGACTGGCTCAGCCTTGCCATGAGCCATCTTGAAGCCGCGGCTGAAGTGGATGGCGAGCTCTCTGACAT
TTTGGAATCCGTCCAAAGTTGTTTTTATACGCTCGAAGACATGTCCCGCTCAATCCGTTCCCGGCTTGACGGACTTGAAT
TTGACCCGGAACGGCTTAACGTAATTGAAGCGCGGCTGAATGAGATCAACCAGTTAAAACGAAAATATGGTAGCTCGATC
GAAGAAATTCTGGAATACGGGTCCAAAATTGAAGAAGAAATCGAATCGATCGTAAACCGTGACCATCATGTGGAGCTTCT
AGAAAAAGAACTGCAAACGGTAAAACGCGATCTGTATTTGGAAGCCAAGCAGCTCAGCGATTTACGCAAAAAATGGGCGG
AAAAGCTGACTAAAAATATCCATTCCGAATTAAAGCAGCTGTATATGGATAAAACAAAGTTTGAAGTCCGTTTTCTTGCC
GCTGCTGATGATTATTATGAGGCGGATGACATTCCGTTCCGGCGCGACGGGCTCGACCAGGTTGAATTTTACATTTCCAC
CAATCCGGGCGAACCGCTAAAACCGCTCGCAAAAACCGCTTCGGGCGGAGAATTGTCGCGGATTATGCTGGCATTAAAAA
CGATATTTTCCCGGCACCAGGGGATCACTTCCGTCATTTTCGACGAAGTGGATACCGGCGTAAGCGGCCGCGTTGCGCAG
GCGATTGCGGAGAAAATTTACCGCATTTCGGTCCATTCGCAAGTCCTCTGCATTACCCATCTGCCGCAGGTTGCCGCCAT
GGCGGATACACATCTGTTGATCATGAAAGAGACTGAAAAGGAGAGAACGCGGACAAAAGTCAAGCCTTTAGGTCAGGAAG
AAAAAATTAAAGAAATCGGCCGTATGATTTCAGGCGTTGAAATGACAGAGTTGACAAGACAGCATGCGAAAGAGCTGCTC
GAACTGGCCGAAGCGATAAAATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

59.162

100

0.598