Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   O2602_RS04105 Genome accession   NZ_CP120208
Coordinates   917677..918627 (+) Length   316 a.a.
NCBI ID   WP_276211039.1    Uniprot ID   -
Organism   Heyndrickxia coagulans strain HOM5301     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 912677..923627
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O2602_RS04095 - 913534..914970 (+) 1437 WP_017551675.1 S41 family peptidase -
  O2602_RS04100 - 916168..917364 (+) 1197 WP_225621021.1 PDZ domain-containing protein -
  O2602_RS04105 ceuB 917677..918627 (+) 951 WP_276211039.1 ABC transporter permease Machinery gene
  O2602_RS04110 - 918620..919570 (+) 951 WP_276211040.1 iron chelate uptake ABC transporter family permease subunit -
  O2602_RS04115 - 919564..920322 (+) 759 WP_026684167.1 ABC transporter ATP-binding protein -
  O2602_RS04120 - 920337..921275 (+) 939 WP_276211041.1 siderophore ABC transporter substrate-binding protein -
  O2602_RS04125 - 921332..921568 (-) 237 WP_026104642.1 4Fe-4S binding protein -
  O2602_RS04130 - 922069..923484 (-) 1416 WP_276210391.1 ISLre2 family transposase -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34438.55 Da        Isoelectric Point: 10.0424

>NTDB_id=804693 O2602_RS04105 WP_276211039.1 917677..918627(+) (ceuB) [Heyndrickxia coagulans strain HOM5301]
MKKRYLVPLLAVLSIISIFIGAENIRPADMLHLSREQTEILLASRLPRLISIIIAGMGMSICGLVMQQLTRNKFVSPTTA
GTMDCARLGILVAIILFSAASPLIKIAVAFCFALAGTLLFMKILGRIKWNDTIFIPLVGLMFGNIVSSVSTFFAYKFDLI
QSLSSWLQGDFSGVLKGKYEMLYLAVPAVLVAYVFANRFTVAGMGEDFAKNLGLNYKQVVNIGLTLVALITSATVLTVGT
IPFLGLIIPNIVSIYRGDHMKKSITVTALLGAVFLLFCDILGRLVIYPYEVPISLTAGIIGSGIFVYLLLRRHAYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=804693 O2602_RS04105 WP_276211039.1 917677..918627(+) (ceuB) [Heyndrickxia coagulans strain HOM5301]
ATGAAAAAAAGATATTTAGTGCCCCTGCTTGCCGTCCTGTCCATCATTTCAATTTTCATCGGCGCAGAAAATATCAGACC
GGCGGATATGCTCCATTTAAGCAGGGAGCAGACGGAAATTTTGCTGGCAAGCCGCCTGCCGCGTCTGATCAGCATCATCA
TTGCAGGCATGGGCATGAGCATTTGCGGCCTTGTGATGCAGCAGTTGACGAGAAATAAATTTGTCTCTCCGACGACAGCC
GGCACGATGGACTGTGCCCGGCTCGGCATTTTGGTTGCGATCATTCTGTTTTCGGCGGCAAGCCCGCTGATCAAAATTGC
GGTTGCTTTTTGCTTTGCACTGGCTGGCACCTTGCTGTTCATGAAGATACTGGGCCGGATTAAATGGAACGATACAATTT
TCATCCCTCTTGTCGGGCTGATGTTTGGCAATATCGTAAGCTCTGTATCGACTTTCTTTGCGTATAAATTCGATTTAATC
CAGAGCCTGTCCTCATGGCTGCAAGGCGATTTTTCAGGCGTGCTGAAAGGGAAGTACGAGATGCTTTATTTAGCAGTTCC
CGCCGTTTTGGTCGCGTATGTGTTCGCAAACCGGTTTACGGTCGCCGGCATGGGGGAAGATTTTGCCAAAAACCTTGGCC
TGAATTACAAGCAGGTGGTCAATATCGGCCTTACCCTTGTCGCGCTGATTACTTCGGCAACTGTACTGACAGTCGGCACC
ATCCCGTTTCTGGGCTTAATTATTCCAAATATTGTGTCCATTTACCGCGGCGACCATATGAAAAAAAGCATTACGGTGAC
GGCGCTGCTTGGGGCAGTGTTCCTGCTATTTTGCGATATTTTGGGGCGCCTTGTCATTTATCCATATGAAGTGCCGATCA
GTTTAACAGCCGGCATCATCGGGAGTGGCATTTTTGTATATTTGCTGCTGAGGAGACACGCTTATGCATAG

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

52.077

99.051

0.516