Detailed information NTG0804692

Bioinformatically predicted

Overview

• Name: comFA
• Type: Machinery gene
• Locus tag: O2602_RS03890
• Genome accession: NZ_CP120208
• Coordinates: 866268..867653 (+)
• Length: 461 a.a.
• NCBI ID: WP_276211027.1
• Uniprot ID: -
• Organism: Heyndrickxia coagulans strain HOM5301
• Function: ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 861268..872653

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
O2602_RS03875	-	862150..862833 (+)	684	WP_276211026.1	response regulator transcription factor	-
O2602_RS03880	-	863141..864565 (-)	1425	WP_035182251.1	amino acid permease	-
O2602_RS03885	-	865130..865972 (+)	843	WP_013858605.1	DegV family protein	-
O2602_RS03890	comFA	866268..867653 (+)	1386	WP_276211027.1	DEAD/DEAH box helicase	Machinery gene
O2602_RS03895	-	867646..868353 (+)	708	WP_026684746.1	ComF family protein	-
O2602_RS03900	-	868420..868815 (+)	396	WP_026684747.1	TIGR03826 family flagellar region protein	-
O2602_RS03905	flgM	868886..869152 (+)	267	WP_026684748.1	flagellar biosynthesis anti-sigma factor FlgM	-
O2602_RS03910	-	869165..869635 (+)	471	WP_026684749.1	flagellar protein FlgN	-
O2602_RS03915	flgK	869657..871273 (+)	1617	WP_276211028.1	flagellar hook-associated protein FlgK	-
O2602_RS03920	flgL	871288..872181 (+)	894	WP_026684751.1	flagellar hook-associated protein FlgL	-

Sequence

Protein

• Length: 461 a.a.
• Molecular weight: 51532.83 Da
• Isoelectric Point: 8.9339

>NTDB_id=804692 O2602_RS03890 WP_276211027.1 866268..867653(+) (comFA) [Heyndrickxia coagulans strain HOM5301]
MPSVFSEQLQRHLAGRILFEPEIPFSPELLDQHFKQGWIRAEPAIQGEFPHCVCLRCGNRAPHLFAEFPCAHCGKTSIYC
RNCLMMGRVTACKPLITWAGPAPAFHSPRHPLHWDGTLSEGQQAASEAVKAAILQKNELLIWAVCGSGKTEIVFKGIEAA
LANGERVCIATPRTDVVLELAPRFRRVFPDIPIAALYGGSPDRHKWAQLVISTTHQLYRFASAFDVVIVDEVDAFPYTFD
ETLQCAVQKAAKDRCARIYLTATPSETWQLECKTGKRPFVTIPARYHRKPLPVPVFKWAGNWRKKFEKGKLPVPVEAWVK
KRLESGKQALLFLPNIRLMKKAEPVFKQLHPAIESVHAEDPDRKEKVERMRAGKTPLLLTTTILERGVTFPDIDVCVVGA
EDAIFTEAALVQIAGRAGRSADFPNGDVTFFHYGKSNAMVKAQRHILSMNEEAGKRGLLDA

Nucleotide

• Length: 1386 bp

>NTDB_id=804692 O2602_RS03890 WP_276211027.1 866268..867653(+) (comFA) [Heyndrickxia coagulans strain HOM5301]
TTGCCTTCTGTTTTCTCCGAACAGCTTCAACGCCACCTCGCCGGACGGATCCTGTTCGAACCGGAAATCCCTTTTTCACC
GGAACTGCTTGATCAGCACTTTAAACAAGGCTGGATCCGCGCTGAGCCGGCGATACAGGGCGAATTCCCGCACTGTGTCT
GCTTGCGCTGCGGCAACCGCGCGCCGCATCTTTTTGCCGAATTCCCTTGCGCCCACTGCGGGAAAACGAGCATTTATTGC
CGGAACTGCCTGATGATGGGGCGGGTCACCGCATGCAAGCCGCTTATCACATGGGCAGGCCCTGCGCCCGCATTCCACTC
GCCCAGGCACCCGCTCCATTGGGATGGCACCCTTTCTGAAGGGCAGCAGGCTGCATCCGAAGCGGTTAAAGCAGCCATTC
TTCAAAAAAACGAGCTCTTGATTTGGGCTGTTTGCGGATCAGGGAAGACAGAGATCGTTTTCAAAGGGATTGAAGCGGCG
CTTGCAAACGGCGAACGCGTCTGCATCGCAACCCCCAGAACAGATGTCGTCCTTGAACTTGCCCCCCGCTTCCGCCGCGT
TTTCCCGGATATTCCGATTGCCGCGCTCTACGGCGGCAGCCCTGACCGCCATAAATGGGCGCAGCTCGTCATCTCCACTA
CCCACCAGCTGTACCGCTTTGCATCCGCCTTTGATGTCGTGATTGTAGATGAAGTGGACGCTTTTCCGTATACTTTCGAT
GAAACGCTGCAGTGCGCCGTTCAAAAAGCGGCAAAAGACCGCTGCGCCCGCATTTATCTTACCGCAACACCAAGTGAAAC
ATGGCAGCTTGAATGCAAGACAGGTAAGCGCCCGTTTGTCACGATCCCGGCCCGCTATCACCGCAAGCCCCTCCCTGTTC
CTGTATTCAAATGGGCAGGCAACTGGCGAAAAAAGTTTGAGAAAGGCAAGCTCCCGGTTCCGGTTGAAGCATGGGTAAAA
AAGAGGCTTGAATCCGGAAAACAGGCGCTTCTTTTTCTCCCGAACATCCGCCTCATGAAAAAAGCAGAGCCGGTTTTTAA
ACAGCTGCATCCAGCGATTGAATCGGTGCACGCAGAAGACCCGGATCGGAAAGAAAAAGTGGAAAGGATGCGCGCCGGCA
AAACACCGCTTTTGCTAACGACGACCATTCTTGAACGCGGCGTCACGTTCCCGGATATTGATGTTTGTGTCGTCGGGGCG
GAAGATGCTATCTTTACGGAAGCCGCCCTCGTCCAGATCGCGGGCCGGGCCGGAAGAAGCGCCGATTTCCCAAATGGAGA
CGTAACGTTTTTCCATTACGGAAAATCAAATGCGATGGTGAAAGCACAGCGCCATATTCTCTCCATGAATGAAGAAGCGG
GAAAGCGGGGGTTGCTCGATGCATGA

Domains

Predicted by InterproScan.

• Helicase conserved C-terminal domain (Helicase_C) (322-420)

• Type III restriction enzyme, res subunit (ResIII) (118-265)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comFA	Bacillus subtilis subsp. subtilis str. 168	50.11	98.265	0.492
comFA	Latilactobacillus sakei subsp. sakei 23K	38.515	93.492	0.36