Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | P3U08_RS05935 | Genome accession | NZ_CP120195 |
| Coordinates | 1261744..1262718 (+) | Length | 324 a.a. |
| NCBI ID | WP_014613820.1 | Uniprot ID | - |
| Organism | Staphylococcus pseudintermedius strain Dog008 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1256744..1267718
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| P3U08_RS05900 (P3U08_05900) | rpmG | 1257130..1257294 (+) | 165 | WP_256726578.1 | 50S ribosomal protein L33 | - |
| P3U08_RS05905 (P3U08_05905) | - | 1257444..1257983 (+) | 540 | WP_037542863.1 | 5-formyltetrahydrofolate cyclo-ligase | - |
| P3U08_RS05910 (P3U08_05910) | - | 1258002..1259441 (+) | 1440 | WP_014613815.1 | rhomboid family intramembrane serine protease | - |
| P3U08_RS05915 (P3U08_05915) | - | 1259443..1259646 (+) | 204 | WP_014613816.1 | YqgQ family protein | - |
| P3U08_RS05920 (P3U08_05920) | - | 1259643..1260629 (+) | 987 | WP_014613817.1 | ROK family glucokinase | - |
| P3U08_RS05925 (P3U08_05925) | - | 1260630..1260941 (+) | 312 | WP_014613818.1 | MTH1187 family thiamine-binding protein | - |
| P3U08_RS05930 (P3U08_05930) | - | 1260954..1261583 (+) | 630 | WP_037542865.1 | MBL fold metallo-hydrolase | - |
| P3U08_RS05935 (P3U08_05935) | comGA | 1261744..1262718 (+) | 975 | WP_014613820.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| P3U08_RS05940 (P3U08_05940) | comGB | 1262687..1263754 (+) | 1068 | WP_096538140.1 | competence type IV pilus assembly protein ComGB | - |
| P3U08_RS05945 (P3U08_05945) | comGC | 1263767..1264090 (+) | 324 | WP_015729165.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| P3U08_RS05950 (P3U08_05950) | comGD | 1264068..1264508 (+) | 441 | WP_014613823.1 | competence type IV pilus minor pilin ComGD | - |
| P3U08_RS05955 (P3U08_05955) | - | 1264613..1264813 (+) | 201 | WP_020219623.1 | hypothetical protein | - |
| P3U08_RS05960 (P3U08_05960) | - | 1264719..1265204 (+) | 486 | WP_080552896.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | - |
| P3U08_RS05965 (P3U08_05965) | - | 1265368..1265895 (+) | 528 | WP_014613826.1 | shikimate kinase | - |
| P3U08_RS05970 (P3U08_05970) | gcvT | 1266053..1267144 (+) | 1092 | WP_323696262.1 | glycine cleavage system aminomethyltransferase GcvT | - |
Sequence
Protein
Download Length: 324 a.a. Molecular weight: 36846.58 Da Isoelectric Point: 7.5584
>NTDB_id=804512 P3U08_RS05935 WP_014613820.1 1261744..1262718(+) (comGA) [Staphylococcus pseudintermedius strain Dog008]
MQLLLDHVIQFALQNEASDIHFIPSQSQVEVKLRVKDQLVLYDTLNLETYQKLLTLLKYQAGLDISTRHKAQSGRYIYEH
KALYYLRVSTLPLNLGTESCVIRITPQYFQNAKAHSVLDIKSNMEKKQGLILFSGPTGAGKSTLMYQMVVYAKQKLNLNI
ITIEDPVEQLVNGITQISVNEKADITYGSSLKAILRCDPDVILIGEIRDSHIARDVIQASLSGHLVLSTIHANDCQGVLL
RLIEMGLSHQDLSQSINLIINQRLITTKNDQRQLVYETMDQQEIHYFLNNNFQLPTAFTSLSHKLQLLNKEGVIDEKILR
KYTI
MQLLLDHVIQFALQNEASDIHFIPSQSQVEVKLRVKDQLVLYDTLNLETYQKLLTLLKYQAGLDISTRHKAQSGRYIYEH
KALYYLRVSTLPLNLGTESCVIRITPQYFQNAKAHSVLDIKSNMEKKQGLILFSGPTGAGKSTLMYQMVVYAKQKLNLNI
ITIEDPVEQLVNGITQISVNEKADITYGSSLKAILRCDPDVILIGEIRDSHIARDVIQASLSGHLVLSTIHANDCQGVLL
RLIEMGLSHQDLSQSINLIINQRLITTKNDQRQLVYETMDQQEIHYFLNNNFQLPTAFTSLSHKLQLLNKEGVIDEKILR
KYTI
Nucleotide
Download Length: 975 bp
>NTDB_id=804512 P3U08_RS05935 WP_014613820.1 1261744..1262718(+) (comGA) [Staphylococcus pseudintermedius strain Dog008]
ATGCAACTACTATTAGATCATGTAATACAATTTGCACTTCAAAATGAGGCATCAGACATTCATTTTATCCCATCACAATC
ACAAGTCGAAGTGAAACTCAGAGTGAAAGATCAACTTGTATTATATGACACATTAAATCTAGAAACGTATCAAAAATTGT
TAACTTTGTTGAAATACCAAGCTGGATTAGATATTTCGACACGCCACAAAGCGCAAAGTGGGCGCTATATTTATGAACAT
AAAGCGTTATATTATTTAAGAGTGTCCACGTTACCTTTAAACTTAGGTACTGAAAGTTGTGTTATTCGTATTACACCACA
ATATTTTCAAAATGCGAAAGCTCATAGTGTATTAGACATCAAATCTAATATGGAGAAAAAGCAAGGTTTAATTCTGTTTA
GCGGGCCTACAGGTGCAGGAAAGAGCACGTTAATGTATCAAATGGTCGTCTATGCTAAACAAAAGTTAAACCTGAATATT
ATCACAATAGAAGACCCGGTCGAGCAGCTTGTGAACGGCATTACGCAAATTTCCGTTAACGAAAAAGCTGATATTACGTA
TGGATCGTCGTTAAAAGCAATTCTTCGTTGTGATCCAGATGTCATCTTAATTGGTGAGATTCGTGACAGTCATATTGCAA
GGGACGTTATACAAGCGAGTTTAAGTGGGCATTTAGTATTGTCGACGATACACGCCAATGATTGTCAAGGGGTGCTCCTT
AGACTGATTGAAATGGGACTCTCTCACCAAGATTTATCTCAATCTATCAATCTCATCATCAATCAAAGACTCATTACAAC
AAAAAACGACCAGCGACAACTCGTCTATGAAACGATGGATCAACAGGAGATTCATTACTTTTTGAATAATAACTTCCAAC
TACCTACTGCTTTCACAAGCCTTTCTCATAAGCTTCAACTTCTGAATAAAGAGGGGGTTATAGATGAAAAGATTTTACGA
AAGTATACGATTTAA
ATGCAACTACTATTAGATCATGTAATACAATTTGCACTTCAAAATGAGGCATCAGACATTCATTTTATCCCATCACAATC
ACAAGTCGAAGTGAAACTCAGAGTGAAAGATCAACTTGTATTATATGACACATTAAATCTAGAAACGTATCAAAAATTGT
TAACTTTGTTGAAATACCAAGCTGGATTAGATATTTCGACACGCCACAAAGCGCAAAGTGGGCGCTATATTTATGAACAT
AAAGCGTTATATTATTTAAGAGTGTCCACGTTACCTTTAAACTTAGGTACTGAAAGTTGTGTTATTCGTATTACACCACA
ATATTTTCAAAATGCGAAAGCTCATAGTGTATTAGACATCAAATCTAATATGGAGAAAAAGCAAGGTTTAATTCTGTTTA
GCGGGCCTACAGGTGCAGGAAAGAGCACGTTAATGTATCAAATGGTCGTCTATGCTAAACAAAAGTTAAACCTGAATATT
ATCACAATAGAAGACCCGGTCGAGCAGCTTGTGAACGGCATTACGCAAATTTCCGTTAACGAAAAAGCTGATATTACGTA
TGGATCGTCGTTAAAAGCAATTCTTCGTTGTGATCCAGATGTCATCTTAATTGGTGAGATTCGTGACAGTCATATTGCAA
GGGACGTTATACAAGCGAGTTTAAGTGGGCATTTAGTATTGTCGACGATACACGCCAATGATTGTCAAGGGGTGCTCCTT
AGACTGATTGAAATGGGACTCTCTCACCAAGATTTATCTCAATCTATCAATCTCATCATCAATCAAAGACTCATTACAAC
AAAAAACGACCAGCGACAACTCGTCTATGAAACGATGGATCAACAGGAGATTCATTACTTTTTGAATAATAACTTCCAAC
TACCTACTGCTTTCACAAGCCTTTCTCATAAGCTTCAACTTCTGAATAAAGAGGGGGTTATAGATGAAAAGATTTTACGA
AAGTATACGATTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Staphylococcus aureus MW2 |
58.514 |
99.691 |
0.583 |
| comGA | Staphylococcus aureus N315 |
58.514 |
99.691 |
0.583 |