Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   L6480_RS12105 Genome accession   NZ_AP022981
Coordinates   2359469..2359747 (+) Length   92 a.a.
NCBI ID   WP_000842216.1    Uniprot ID   A0A9W5QHH7
Organism   Bacillus cereus strain 30048     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2354469..2364747
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6480_RS12085 (BC30048_2339) - 2355238..2355840 (+) 603 WP_074554409.1 hypothetical protein -
  L6480_RS12090 (BC30048_2340) - 2356125..2357306 (+) 1182 WP_100651609.1 agmatine deiminase family protein -
  L6480_RS12095 (BC30048_2341) - 2357830..2358081 (-) 252 WP_048538843.1 helix-turn-helix transcriptional regulator -
  L6480_RS12100 (BC30048_2342) - 2358453..2359330 (+) 878 Protein_2311 helix-turn-helix domain-containing protein -
  L6480_RS12105 (BC30048_2343) abrB 2359469..2359747 (+) 279 WP_000842216.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  L6480_RS12110 (BC30048_2344) - 2360359..2361609 (+) 1251 WP_001032360.1 hypothetical protein -
  L6480_RS12115 (BC30048_2345) - 2361677..2362435 (+) 759 WP_000347981.1 TSUP family transporter -
  L6480_RS12120 (BC30048_2346) - 2362689..2363348 (+) 660 WP_000876937.1 CatB-related O-acetyltransferase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10378.28 Da        Isoelectric Point: 10.0092

>NTDB_id=80449 L6480_RS12105 WP_000842216.1 2359469..2359747(+) (abrB) [Bacillus cereus strain 30048]
MKSRGITRKADSMGRIVIPMEIRRSLGIVEKDSLEMFIEEDQIILRKYQSPRACALTGDISDSNISLANGKIIVSPNGME
LLIKKLQQYLLK

Nucleotide


Download         Length: 279 bp        

>NTDB_id=80449 L6480_RS12105 WP_000842216.1 2359469..2359747(+) (abrB) [Bacillus cereus strain 30048]
ATGAAATCAAGAGGAATTACTCGTAAAGCAGATAGCATGGGACGTATTGTTATTCCAATGGAAATAAGACGGAGTTTAGG
AATTGTAGAAAAAGATTCTCTTGAAATGTTTATAGAAGAGGACCAGATTATTTTACGAAAATATCAATCTCCAAGAGCTT
GTGCACTTACAGGGGATATTTCAGACAGCAATATTTCGTTAGCGAATGGGAAGATTATTGTAAGTCCAAACGGGATGGAA
CTGTTAATAAAGAAGTTACAGCAATATCTTTTAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(9-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

50

97.826

0.489

Multiple sequence alignment