Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   L6480_RS09860 Genome accession   NZ_AP022981
Coordinates   1926406..1926693 (+) Length   95 a.a.
NCBI ID   WP_000648324.1    Uniprot ID   -
Organism   Bacillus cereus strain 30048     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1921406..1931693
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6480_RS09840 (BC30048_1874) - 1922580..1922777 (+) 198 WP_001048104.1 DUF4083 domain-containing protein -
  L6480_RS09845 (BC30048_1875) - 1922809..1923270 (+) 462 WP_000024992.1 NUDIX hydrolase -
  L6480_RS09850 (BC30048_1876) nadE 1923320..1924138 (-) 819 WP_000174904.1 ammonia-dependent NAD(+) synthetase -
  L6480_RS09855 (BC30048_1877) - 1924409..1926289 (+) 1881 WP_001025997.1 FtsX-like permease family protein -
  L6480_RS09860 (BC30048_1878) abrB 1926406..1926693 (+) 288 WP_000648324.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  L6480_RS09865 (BC30048_1879) - 1926969..1927916 (+) 948 WP_000099762.1 serine protease -
  L6480_RS09870 (BC30048_1880) - 1927959..1928267 (-) 309 WP_001259909.1 helix-turn-helix transcriptional regulator -
  L6480_RS09875 (BC30048_1881) - 1928374..1929309 (+) 936 WP_100651397.1 aldo/keto reductase -
  L6480_RS09880 (BC30048_1882) - 1929357..1930532 (+) 1176 WP_100651399.1 MFS transporter -
  L6480_RS29550 (BC30048_1883) - 1930581..1930787 (+) 207 WP_001101741.1 hypothetical protein -
  L6480_RS09885 (BC30048_1884) - 1930931..1931293 (+) 363 WP_100651401.1 DUF805 domain-containing protein -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10587.32 Da        Isoelectric Point: 4.8408

>NTDB_id=80446 L6480_RS09860 WP_000648324.1 1926406..1926693(+) (abrB) [Bacillus cereus strain 30048]
MKATGVIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEADKIILQKYQPYNACQITGDVSEQNISLANGNITVGIEGAE
YLVKEIEKFLNKSEV

Nucleotide


Download         Length: 288 bp        

>NTDB_id=80446 L6480_RS09860 WP_000648324.1 1926406..1926693(+) (abrB) [Bacillus cereus strain 30048]
ATGAAAGCAACAGGAGTTATTCGAAAAGTAGACGAATTAGGACGAATTGTTATCCCTAAAGAATTACGCGATGTATTGGG
AATACAAATCAAATCACCGCTTGAAATTTTTGTAGAAGCAGATAAAATCATTTTACAAAAATATCAACCTTACAATGCTT
GCCAAATCACAGGTGATGTTTCAGAGCAGAACATATCATTAGCAAATGGAAATATTACTGTTGGGATAGAGGGAGCGGAA
TATTTAGTAAAAGAAATAGAAAAGTTTTTAAACAAGAGTGAGGTTTAG

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.556

94.737

0.526

Multiple sequence alignment