Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   L6480_RS06330 Genome accession   NZ_AP022981
Coordinates   1232385..1234211 (+) Length   608 a.a.
NCBI ID   WP_212105447.1    Uniprot ID   -
Organism   Bacillus cereus strain 30048     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1227385..1239211
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6480_RS06310 (BC30048_1162) - 1227688..1228362 (-) 675 WP_000362607.1 TerC family protein -
  L6480_RS06315 (BC30048_1163) mecA 1228708..1229391 (+) 684 WP_000350713.1 adaptor protein MecA Regulator
  L6480_RS06320 (BC30048_1164) - 1229464..1231008 (+) 1545 WP_000799194.1 cardiolipin synthase -
  L6480_RS06325 (BC30048_1165) - 1231089..1232333 (+) 1245 WP_000628315.1 competence protein CoiA family protein -
  L6480_RS06330 (BC30048_1166) pepF 1232385..1234211 (+) 1827 WP_212105447.1 oligoendopeptidase F Regulator
  L6480_RS06335 (BC30048_1167) - 1234341..1234514 (-) 174 WP_000750355.1 hypothetical protein -
  L6480_RS06340 (BC30048_1168) - 1234744..1235637 (-) 894 WP_000360645.1 ClpXP adapter SpxH family protein -
  L6480_RS06345 (BC30048_1169) - 1235637..1236035 (-) 399 WP_000043390.1 hypothetical protein -
  L6480_RS06350 (BC30048_1170) - 1236204..1236782 (-) 579 WP_000191116.1 CYTH domain-containing protein -
  L6480_RS06355 (BC30048_1171) - 1236927..1237298 (+) 372 WP_001180003.1 hypothetical protein -
  L6480_RS06360 (BC30048_1172) - 1237329..1237967 (+) 639 WP_001081482.1 GTP pyrophosphokinase family protein -
  L6480_RS06365 (BC30048_1173) - 1237986..1238783 (+) 798 WP_000673190.1 NAD kinase -

Sequence

Protein


Download         Length: 608 a.a.        Molecular weight: 70209.65 Da        Isoelectric Point: 4.6443

>NTDB_id=80442 L6480_RS06330 WP_212105447.1 1232385..1234211(+) (pepF) [Bacillus cereus strain 30048]
MSEQNKAKALPDRNEIEEASTWRLEDIFQTDAEWEKEFQAIKELLPKLTEFKGKLGDAADNLLEALQYEDEILMRLGKLY
TYAHMRYDQDTTNSVYQALNDRATNLYSQVSSSTAYIVPEILSISEDTLQTFLKENRDLSVYEHALEEITRQRPHVLSEA
EEALLAEASEVMSSSSNTFGMLNNADLKFPSIKGEDGEEIEITHGRYIQFLESDDPRVRKDAFKAVYETYGKFKNTFAST
LSGAVKRNNFNARVRKYDSARQAALSNNNIPEAVYDQLVETVNDNLHLLHRYIDIRKRALGLDELHMYDLYTPLVPEVKM
NVKYEEAQDLLLKSLNVLGDEYVDILKEAYENRWVDVYENKGKRSGAYSSGAYGTNPYILMNWHDNVNNLFTLAHEFGHS
VHSYYTRKTQPHVYGDYSIFVAEVASTCNEALLNDYLLKTTEDKKERLYLLNHYLEGFRGTVFRQTMFAEFEHIIHKKVQ
EGHAVTPDMLTEIYYDLNKKYFGDALVIDEEIGLEWSRIPHFYYNYYVYQYATGFSAATALSKQILEEGQPAVERYINEF
LKAGSSDYPIEVLKKAGVDMASPEPVKEALQVFEEKLNELEALLFEEK

Nucleotide


Download         Length: 1827 bp        

>NTDB_id=80442 L6480_RS06330 WP_212105447.1 1232385..1234211(+) (pepF) [Bacillus cereus strain 30048]
ATGTCTGAACAAAACAAAGCGAAAGCATTACCAGATCGCAACGAGATTGAAGAAGCAAGTACGTGGCGATTAGAAGATAT
TTTCCAAACGGATGCAGAATGGGAAAAAGAATTCCAAGCTATTAAAGAGCTATTACCGAAGTTAACTGAATTTAAAGGGA
AACTTGGTGACGCTGCGGACAATTTACTTGAGGCATTGCAATATGAAGATGAAATATTAATGCGATTAGGTAAGTTATAT
ACATATGCTCATATGCGTTACGATCAAGATACAACAAACTCTGTATATCAAGCATTAAATGATCGTGCAACAAATTTATA
TTCACAAGTATCTAGTAGCACAGCGTATATTGTGCCTGAAATTTTATCGATTTCAGAAGATACATTGCAAACATTCTTGA
AGGAAAATAGAGATTTAAGTGTATATGAACATGCATTAGAAGAAATTACACGTCAACGTCCGCACGTATTATCAGAAGCT
GAGGAAGCTTTATTAGCGGAAGCATCTGAAGTAATGAGTTCATCAAGCAATACATTCGGTATGTTGAATAACGCGGATTT
AAAATTCCCATCTATTAAAGGGGAAGACGGAGAAGAAATAGAAATTACACATGGCCGTTACATTCAGTTTTTAGAAAGTG
ATGATCCTCGTGTTCGCAAAGATGCATTTAAAGCTGTATATGAAACGTACGGAAAATTTAAAAACACATTCGCAAGTACG
TTAAGCGGAGCAGTAAAACGTAATAATTTCAATGCGCGTGTTCGTAAATATGATTCTGCTCGCCAAGCTGCACTGAGCAA
TAATAATATTCCAGAAGCAGTATACGATCAACTCGTTGAAACAGTAAATGACAACTTACATTTATTACACCGTTACATCG
ATATTCGTAAGCGTGCACTAGGACTTGATGAGCTTCATATGTATGATTTATATACACCACTTGTACCAGAAGTGAAAATG
AATGTGAAATACGAAGAAGCGCAAGACCTTTTATTAAAATCTTTAAACGTACTTGGTGATGAATATGTTGATATTTTGAA
AGAGGCATATGAAAATCGCTGGGTAGATGTGTATGAGAATAAAGGAAAACGAAGCGGGGCATATTCATCTGGTGCATATG
GAACAAATCCGTATATTTTAATGAACTGGCATGATAATGTAAATAATTTATTTACACTTGCTCATGAGTTTGGTCATTCG
GTGCATAGTTACTATACAAGAAAAACACAACCGCACGTATATGGTGATTATTCCATCTTCGTAGCAGAAGTGGCATCTAC
TTGTAATGAAGCGCTTCTAAATGATTATTTATTAAAAACGACAGAAGATAAGAAAGAGCGTCTATATTTATTAAATCATT
ATTTAGAAGGGTTCCGTGGTACTGTATTCCGTCAAACGATGTTTGCAGAGTTTGAACATATTATTCATAAGAAAGTACAA
GAAGGACATGCTGTTACGCCAGACATGTTAACGGAAATTTACTACGATTTAAATAAAAAATATTTCGGTGACGCTTTAGT
AATCGACGAAGAAATTGGTTTAGAATGGTCTCGTATTCCACACTTCTACTACAACTATTACGTATATCAATACGCAACAG
GATTTAGTGCAGCGACAGCTCTATCTAAACAGATTTTAGAAGAAGGACAACCAGCAGTAGAACGTTATATTAATGAGTTC
TTAAAAGCAGGAAGTTCTGATTATCCAATTGAAGTGCTGAAAAAAGCAGGAGTAGATATGGCATCTCCTGAACCAGTAAA
AGAGGCGCTACAAGTATTTGAAGAGAAATTAAATGAATTAGAAGCATTATTATTTGAAGAAAAGTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(211-591)

Oligopeptidase F (Peptidase_M3_N)

(120-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

49.916

97.533

0.487

Multiple sequence alignment